TkA08G299380 | RubberDandelionOmics

Gene overview

TkA08G299380

Reference: TK1151 Chr: Chr08 Coordinates: 77599899-77603602 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2199 bp · TkA08G299380|TK1151|cDNA

ATGATGGGAGCAATGTACGCTGCTGTTATGTTTCTTGGAGGAACCAATACTTCTTCCGTACAGGCTGTAGTATCCGTTGAAAGAACAGTTTTTTATCGTGAAAAAGCTGCAGGGATGTATTCGCCACTCCCATATGCATTTGCTCAGAAGGAGAAGCAAATTGAGGTGGGGTGCATCCCATTACACGATGCAACAAGTACAGGAAAGTTGCACTTTCCTAAACAAGCGATGGATGGCTTGTTGGAGCTAATGAAGGCAAT...

CDS

Download CDS FASTA

2199 bp · TkA08G299380|TK1151|CDS

ATGATGGGAGCAATGTACGCTGCTGTTATGTTTCTTGGAGGAACCAATACTTCTTCCGTACAGGCTGTAGTATCCGTTGAAAGAACAGTTTTTTATCGTGAAAAAGCTGCAGGGATGTATTCGCCACTCCCATATGCATTTGCTCAGAAGGAGAAGCAAATTGAGGTGGGGTGCATCCCATTACACGATGCAACAAGTACAGGAAAGTTGCACTTTCCTAAACAAGCGATGGATGGCTTGTTGGAGCTAATGAAGGCAAT...

Protein

Download Protein FASTA

732 aa · TkA08G299380|TK1151|PROTEIN

MMGAMYAAVMFLGGTNTSSVQAVVSVERTVFYREKAAGMYSPLPYAFAQKEKQIEVGCIPLHDATSTGKLHFPKQAMDGLLELMKAMCDSTHQRPRHPPNSAGQPPVNSPYGWVYIPPATNRHPPHWSATTPSPTAQWAAPRSAQSWSSPTPNSQGLLGTRPPSGHSTNRQPSQPSPQAYLQQSGYEQPPWSWLGNSDQPTSLPHLFNTMTLTDLGQDGWVMDTGATDHVHANTGILDSLCNNAYTPRSIYVGNGSAIPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G299380`
TK1151 ID	TkA08G299380
OH-1004 ID	LXL04_001570
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	56.800
Protein coverage (%)	TK1151 65.710 / OH-1004 37.206 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G299380

Location Chr08:77599899-77603602 (+)

Description Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001570 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0071897 DNA biosynthetic process Biological Process

GO:0042575 DNA polymerase complex Cellular Component

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.653

Rank 1 · TkA08G299380 · TK1151

Nucleus0.542

Rank 2 · TkA08G299380 · TK1151

Mitochondrion0.053

Rank 3 · TkA08G299380 · TK1151

Peroxisome0.033

Rank 4 · TkA08G299380 · TK1151

Endoplasmic reticulum0.030

Rank 5 · TkA08G299380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01061ABC2_membrane2-49 aa

PF22936Pol_BBD220-301 aa

PF13976gag_pre-integrs337-392 aa

PF01061ABC2_membrane393-428 aa

PF00665rve406-504 aa

PF29688TnsB_C467-525 aa

PF25597SH3_retrovirus579-637 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G299380	`PF01061`	ABC2_membrane	2	49	2.2e-07	31.4
TkA08G299380	`PF22936`	Pol_BBD	220	301	8.5e-08	33.1
TkA08G299380	`PF13976`	gag_pre-integrs	337	392	2.3e-12	47.2
TkA08G299380	`PF01061`	ABC2_membrane	393	428	2.2e-07	31.4
TkA08G299380	`PF00665`	rve	406	504	3.7e-10	40.7
TkA08G299380	`PF29688`	TnsB_C	467	525	2.6e-05	24.8
TkA08G299380	`PF25597`	SH3_retrovirus	579	637	1.1e-21	77.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94HW2`	Arabidopsis thaliana	sp\|Q94HW2\|POLR1_ARATH Retrovirus-related Pol polyprotein from transposon RE1	37.700%	Swiss-Prot	Medium
`Q9ZT94`	Arabidopsis thaliana	sp\|Q9ZT94\|POLR2_ARATH Retrovirus-related Pol polyprotein from transposon RE2	34.600%	Swiss-Prot	Medium

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