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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G138760
Reference: TK1151 Chr: Chr08 Coordinates: 36090840-36092384 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1545 bp · TkA08G138760|TK1151|cDNA

ATGGAAACTAAACTTTTCGATCTCAAAACCCAACTCTCTGAGCTCTCTCACTTCCCACCGAACTCTCTCTCCGTCGACCTCCTCCGCTCTCTCTCCCGAACTCTCTCCGATGCTCTGAGTATCTCGCTTACCTGCCACAGCCCGAATCTCCCCGGCGGCAAGCTCAAAACCCAGAATGAAGTTGACTCTGTCTCTGCAAAACTCGACAACCACATCAGAGACTGGGAAGTTTTGATCAAAAGCGGCGTTCTCCACGACGG...

CDS

Download CDS FASTA

1545 bp · TkA08G138760|TK1151|CDS

ATGGAAACTAAACTTTTCGATCTCAAAACCCAACTCTCTGAGCTCTCTCACTTCCCACCGAACTCTCTCTCCGTCGACCTCCTCCGCTCTCTCTCCCGAACTCTCTCCGATGCTCTGAGTATCTCGCTTACCTGCCACAGCCCGAATCTCCCCGGCGGCAAGCTCAAAACCCAGAATGAAGTTGACTCTGTCTCTGCAAAACTCGACAACCACATCAGAGACTGGGAAGTTTTGATCAAAAGCGGCGTTCTCCACGACGG...

Protein

Download Protein FASTA

514 aa · TkA08G138760|TK1151|PROTEIN

METKLFDLKTQLSELSHFPPNSLSVDLLRSLSRTLSDALSISLTCHSPNLPGGKLKTQNEVDSVSAKLDNHIRDWEVLIKSGVLHDGVVSSLSVSKRETVRIEARNLVTLLQIGSVDSRTLPLDSLLRLIEEDDKNVLIAVAQGVFPVLVRLLDSGSSAEIREKTVTAIARISTIDSSKHVLMAEGLLLLHYLILVLESGSGLAKEKACITLQALTLSKENARAICSRGGISSLLEICQSGTPSSQAFAAGVLRNITIFS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G138760
TK1151 IDTkA08G138760
OH-1004 IDLXL04_031964
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 93.116
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G138760
LocationChr08:36090840-36092384 (-)
DescriptionSimilar to PUB10: U-box domain-containing protein 10
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031964 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000011 vacuole inheritance Biological Process
GO:0000045 autophagosome assembly Biological Process
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031648 protein destabilization Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0048364 root development Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0071562 nucleus-vacuole junction assembly Biological Process
KEGG gene cross-reference
ago:AGOS_AEL048W
ath:AT1G23030
ath:AT1G71020
ath:AT2G23140
ath:AT3G46510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.540
Rank 1 · TkA08G138760 · TK1151
Nucleus0.308
Rank 2 · TkA08G138760 · TK1151
Cell membrane0.191
Rank 3 · TkA08G138760 · TK1151
Endoplasmic reticulum0.056
Rank 4 · TkA08G138760 · TK1151
Golgi apparatus0.051
Rank 5 · TkA08G138760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23005DUF70322-83 aa
PF25598ARM_PUB105-228 aa
PF05804KAP106-355 aa
PF00514Arm107-120 aa
PF02985HEAT124-143 aa
PF13513HEAT_EZ130-172 aa
PF24768ARM_ARMC5133-300 aa
PF00514Arm134-173 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G138760PF23005DUF70322831.5e-2280.3
TkA08G138760PF25598ARM_PUB1052287.7e-1039.4
TkA08G138760PF05804KAP1063550.429.5
TkA08G138760PF00514Arm1071201.1e-1660.9
TkA08G138760PF02985HEAT1241432.89.2
TkA08G138760PF13513HEAT_EZ1301720.002818.9
TkA08G138760PF24768ARM_ARMC51333001.7e-1971.1
TkA08G138760PF00514Arm1341731.1e-1660.9
TkA08G138760PF02985HEAT1451732.89.2
TkA08G138760PF13513HEAT_EZ1892140.002818.9
TkA08G138760PF02985HEAT2052152.89.2
TkA08G138760PF24768ARM_ARMC52084291.7e-1971.1
TkA08G138760PF00514Arm2182571.1e-1660.9
TkA08G138760PF25598ARM_PUB2292727.7e-1039.4
TkA08G138760PF13513HEAT_EZ2332560.002818.9
TkA08G138760PF00514Arm2602981.1e-1660.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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