TkA08G094440 | RubberDandelionOmics

Gene overview

TkA08G094440

Reference: TK1151 Chr: Chr08 Coordinates: 24448654-24451726 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1725 bp · TkA08G094440|TK1151|cDNA

ATGACAATGAACGAACCCCATTCATATGCTCTGGGTGGATATGCTTGGGGTTCACTTGCACTTGGTCGAGGTGGTCCACGTCATGACCTTGTTACACGTATTCTAGCTTCGGGCAACAATCTTGGATTTGGTACTCTTGGTGGTCAAAGAAGTTACGACAATCATGGTGTTGGGAATCCGGCCACTGAGCCATATATTGTAGCACACAACCTACTCCTTACTCATGCTAATGTTGTTAAACTATATCGTCAAGTATTTCA...

CDS

Download CDS FASTA

1725 bp · TkA08G094440|TK1151|CDS

ATGACAATGAACGAACCCCATTCATATGCTCTGGGTGGATATGCTTGGGGTTCACTTGCACTTGGTCGAGGTGGTCCACGTCATGACCTTGTTACACGTATTCTAGCTTCGGGCAACAATCTTGGATTTGGTACTCTTGGTGGTCAAAGAAGTTACGACAATCATGGTGTTGGGAATCCGGCCACTGAGCCATATATTGTAGCACACAACCTACTCCTTACTCATGCTAATGTTGTTAAACTATATCGTCAAGTATTTCA...

Protein

Download Protein FASTA

574 aa · TkA08G094440|TK1151|PROTEIN

MTMNEPHSYALGGYAWGSLALGRGGPRHDLVTRILASGNNLGFGTLGGQRSYDNHGVGNPATEPYIVAHNLLLTHANVVKLYRQVFQVHRAIGLWKIPGHYTEEEVNLVKGSYDFLGFNYYISLYATNATPTDVVSVLTDSRSIIKALTSLRSCPSQSIHSRSIRVPPMANKYTQITAATHLTTKLTPHNYPVWRRQVEATLISLELEDFIIGSSNQPPKEVKDKDGKSISNPEYLLWYRKDQMILSALLGSCSESIQPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G094440`
TK1151 ID	TkA08G094440
OH-1004 ID	LXL04_027276
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	82.100
Protein coverage (%)	TK1151 64.460 / OH-1004 39.707 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G094440

Location Chr08:24448654-24451726 (+)

Description Similar to RE2: Retrovirus-related Pol polyprotein from transposon RE2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release
`At1g51470`	Hydrolyzes sinigrin and, with lower efficiency, p-nitrophenyl beta-D-glucoside.	Myrosinases from root and leaves of Arabidopsis thaliana have different catalytic properties.2009 · DOI: 10.1016/j.phytochem.2009.07.036

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027276 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.420

Rank 1 · TkA08G094440 · TK1151

Nucleus0.206

Rank 2 · TkA08G094440 · TK1151

Peroxisome0.193

Rank 3 · TkA08G094440 · TK1151

Mitochondrion0.116

Rank 4 · TkA08G094440 · TK1151

Plastid0.094

Rank 5 · TkA08G094440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00232Glyco_hydro_156-87 aa

PF13696zf-CCHC_297-101 aa

PF00232Glyco_hydro_1101-133 aa

PF14223Retrotran_gag_2199-332 aa

PF00098zf-CCHC407-422 aa

PF13696zf-CCHC_2407-421 aa

PF22936Pol_BBD454-496 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G094440	`PF00232`	Glyco_hydro_1	56	87	6e-07	29.1
TkA08G094440	`PF13696`	zf-CCHC_2	97	101	1.2	9.7
TkA08G094440	`PF00232`	Glyco_hydro_1	101	133	6e-07	29.1
TkA08G094440	`PF14223`	Retrotran_gag_2	199	332	6.8e-12	46.2
TkA08G094440	`PF00098`	zf-CCHC	407	422	0.025	15.4
TkA08G094440	`PF13696`	zf-CCHC_2	407	421	1.2	9.7
TkA08G094440	`PF22936`	Pol_BBD	454	496	9.8e-06	26.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94HW2`	Arabidopsis thaliana	sp\|Q94HW2\|POLR1_ARATH Retrovirus-related Pol polyprotein from transposon RE1	33.300%	Swiss-Prot	Medium
`Q9ZT94`	Arabidopsis thaliana	sp\|Q9ZT94\|POLR2_ARATH Retrovirus-related Pol polyprotein from transposon RE2	32.600%	Swiss-Prot	Medium
`Q3ECS3`	Arabidopsis thaliana	sp\|Q3ECS3\|BGL35_ARATH Myrosinase 5	32.100%	Swiss-Prot	Low

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