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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G053450
Reference: TK1151 Chr: Chr08 Coordinates: 13690680-13693828 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1932 bp · TkA08G053450|TK1151|cDNA

CCTAATAAAGTCAACAAATGAGTTCGACTGACTATATATAAACCTCACAAATCAAGCTTCAGATAAAGTCATAAAACTCTTAAACCATGGCTGAACATTTCATTTTGCATTCGGCTCTTCTCCTATCTATATTTACATTTTCTGTTTCGGGTCAAGTGTTTTGGAGCGTAAATTGTGGGGAATCCGAAACGTACATTGATAGTAACCAAATTACTTGGACACCTGACGCAACCTTAGTCTCAAATGGGGTTGCTCGAGTG...

CDS

Download CDS FASTA

1743 bp · TkA08G053450|TK1151|CDS

ATGGCTGAACATTTCATTTTGCATTCGGCTCTTCTCCTATCTATATTTACATTTTCTGTTTCGGGTCAAGTGTTTTGGAGCGTAAATTGTGGGGAATCCGAAACGTACATTGATAGTAACCAAATTACTTGGACACCTGACGCAACCTTAGTCTCAAATGGGGTTGCTCGAGTGGTCCAGTCAAGTAACCAAATATCTACTGTTCTAGACTCTCTCAGAGTTTTCACTAGTCGAAATAAGAATTGTTACTCTACCCCAGT...

Protein

Download Protein FASTA

580 aa · TkA08G053450|TK1151|PROTEIN

MAEHFILHSALLLSIFTFSVSGQVFWSVNCGESETYIDSNQITWTPDATLVSNGVARVVQSSNQISTVLDSLRVFTSRNKNCYSTPVTKGEKVLVRAIFNYGNYDRLSSPPTFDLHFDGNFWTTVETSNEGFNMYEVTYVTRGDVVSVCVAQTKSGQFPFMSTLEVRSVDSNVYSEVDADRALFLINRWSYGASGILRFPQDPYDRIWRPISDITNVTNDAILVDPTGANNPPAEIFDNAATENNRSDSLYLATIAPGDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G053450
TK1151 IDTkA08G053450
OH-1004 IDLXL04_017737
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G053450
LocationChr08:13690680-13693828 (-)
DescriptionSimilar to At2g19210: Putative leucine-rich repeat receptor-like protein kinase At2g19210
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g24485 Uncharacterized protein At1g24485. No verified direct reference in this release
At2g19190 Involved in innate immune response of plants. No verified direct reference in this release
At1g67720 Probable LRR receptor-like serine/threonine-protein kinase At1g67720. No verified direct reference in this release
At5g48740 Probable LRR receptor-like serine/threonine-protein kinase At5g48740. No verified direct reference in this release
At3g08680 Probable inactive receptor kinase At3g08680. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017737 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009617 response to bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G51820
ath:AT2G19190
ath:AT2G19210
ath:AT2G19230
ath:AT5G59650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.616
Rank 1 · TkA08G053450 · TK1151
Extracellular0.191
Rank 2 · TkA08G053450 · TK1151
Endoplasmic reticulum0.105
Rank 3 · TkA08G053450 · TK1151
Cytoplasm0.087
Rank 4 · TkA08G053450 · TK1151
Lysosome / Vacuole0.044
Rank 5 · TkA08G053450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12819Malectin_like28-344 aa
PF00560LRR_137-46 aa
PF00560LRR_161-70 aa
PF12799LRR_462-70 aa
PF15102TMEM154258-295 aa
PF12799LRR_4397-432 aa
PF00560LRR_1399-415 aa
PF00560LRR_1422-442 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G053450PF12819Malectin_like283446.8e-70236.7
TkA08G053450PF00560LRR_137463.6e-0626.7
TkA08G053450PF00560LRR_161703.6e-0626.7
TkA08G053450PF12799LRR_462700.001219.7
TkA08G053450PF15102TMEM1542582950.1312.8
TkA08G053450PF12799LRR_43974320.001219.7
TkA08G053450PF00560LRR_13994153.6e-0626.7
TkA08G053450PF00560LRR_14224423.6e-0626.7
TkA08G053450PF13855LRR_84234770.0007220.0
TkA08G053450PF12799LRR_44234570.001219.7
TkA08G053450PF00560LRR_14454653.6e-0626.7
TkA08G053450PF15102TMEM1544745440.1312.8
TkA08G053450PF17870Insulin_TMD5065370.0813.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A5PHT0Arabidopsis thalianasp|A5PHT0|Y1448_ARATH Uncharacterized protein At1g2448535.700%Swiss-ProtMedium
O64483Arabidopsis thalianasp|O64483|SIRK_ARATH Senescence-induced receptor-like serine/threonine-protein kinase32.600%Swiss-ProtMedium
C0LGI2Arabidopsis thalianasp|C0LGI2|Y1677_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g6772031.000%Swiss-ProtMedium
C0LGV0Arabidopsis thalianasp|C0LGV0|Y5487_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g4874030.200%Swiss-ProtMedium
Q9C9Y8Arabidopsis thalianasp|Q9C9Y8|Y3868_ARATH Probable inactive receptor kinase At3g0868038.600%Swiss-ProtLow

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