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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G034980
Reference: TK1151 Chr: Chr08 Coordinates: 8948041-8949765 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

696 bp · TkA08G034980|TK1151|cDNA

ATGAACGAAGAAGTGATGTGCGACACAACATTAGCTCTTGGGATTGGAGTGGGGATGCAAAGGGAGAGGCAATCAAAGCAACACAAGAGGGGTGTTTGGTTGAATCTTTCATTGCCACTTCATCCAAAGATTGAAGCTAACAATGATGATCAAGACTCTAATTTTAGTTCTAAAACCATTGATGATCACGAAGAACAAGAAGAGAGAGGGATAAAACGAAGCGCTAGCAACACCGATGTCTATAATAACAATAGCGATGG...

CDS

Download CDS FASTA

696 bp · TkA08G034980|TK1151|CDS

ATGAACGAAGAAGTGATGTGCGACACAACATTAGCTCTTGGGATTGGAGTGGGGATGCAAAGGGAGAGGCAATCAAAGCAACACAAGAGGGGTGTTTGGTTGAATCTTTCATTGCCACTTCATCCAAAGATTGAAGCTAACAATGATGATCAAGACTCTAATTTTAGTTCTAAAACCATTGATGATCACGAAGAACAAGAAGAGAGAGGGATAAAACGAAGCGCTAGCAACACCGATGTCTATAATAACAATAGCGATGG...

Protein

Download Protein FASTA

231 aa · TkA08G034980|TK1151|PROTEIN

MNEEVMCDTTLALGIGVGMQRERQSKQHKRGVWLNLSLPLHPKIEANNDDQDSNFSSKTIDDHEEQEERGIKRSASNTDVYNNNSDGSRKKLKLTTEQTTSLENSFKINSTLNTGQKHELAKKLNLLPRQIEVWFQNRRARTKLKQIEQECALLKKCCETLNEENRRLKKELQEVRCYSIKFDQPPYPPLPFYIRYATTAEMLHPCDQDTKTVILPNGGSIAQSHAPVKLS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G034980
TK1151 IDTkA08G034980
OH-1004 IDLXL04_017987
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)80.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G034980
LocationChr08:8948041-8949765 (-)
DescriptionSimilar to HOX19: Homeobox-leucine zipper protein HOX19
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37790 Probable transcription factor. No verified direct reference in this release
At5g06710 Probable transcription factor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XE76 Probable transcription factor. No verified direct reference in this release
Os03g0231000 Probable transcription factor. No verified direct reference in this release
UniProt: A2Z1U1 Probable transcription factor. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017987 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function
GO:0001217 DNA-binding transcription repressor activity Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0043565 sequence-specific DNA binding Molecular Function
KEGG gene cross-reference
ath:AT4G37790
ath:AT5G06710
dosa:Os03g0231000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981
Rank 1 · TkA08G034980 · TK1151
Cytoplasm0.071
Rank 2 · TkA08G034980 · TK1151
Cell membrane0.022
Rank 3 · TkA08G034980 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA08G034980 · TK1151
Plastid0.009
Rank 5 · TkA08G034980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14151YfhD19-67 aa
PF15009STING_LBD23-121 aa
PF27450AtcB_C34-107 aa
PF11365SOGA69-102 aa
PF25450Rab11-FIP369-101 aa
PF21037CCDC138_cc72-108 aa
PF19776DUF626284-84 aa
PF00046Homeodomain89-143 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G034980PF14151YfhD19670.09813.6
TkA08G034980PF15009STING_LBD231210.04113.9
TkA08G034980PF27450AtcB_C341070.005617.4
TkA08G034980PF11365SOGA691020.008317.9
TkA08G034980PF25450Rab11-FIP3691012.39.3
TkA08G034980PF21037CCDC138_cc721080.4211.4
TkA08G034980PF19776DUF626284841.59.7
TkA08G034980PF00046Homeodomain891433.9e-1659.3
TkA08G034980PF24627PUMA_CC891070.006717.1
TkA08G034980PF02346Vac_Fusion901103.68.3
TkA08G034980PF12443AKNA951050.01516.6
TkA08G034980PF02183HALZ1161277.3e-0730.0
TkA08G034980PF05920Homeobox_KN1161410.0002621.5
TkA08G034980PF08847Crr61241950.2311.9
TkA08G034980PF19776DUF62621261741.59.7
TkA08G034980PF25450Rab11-FIP31361752.39.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P46604Arabidopsis thalianasp|P46604|HAT22_ARATH Homeobox-leucine zipper protein HAT2256.700%Swiss-ProtMedium
P46665Arabidopsis thalianasp|P46665|HAT14_ARATH Homeobox-leucine zipper protein HAT1450.300%Swiss-ProtMedium
A2XE76Oryza sativa subsp. indicasp|A2XE76|HOX19_ORYSI Homeobox-leucine zipper protein HOX1955.700%Swiss-ProtMedium
Q8GRL4Oryza sativa subsp. japonicasp|Q8GRL4|HOX19_ORYSJ Homeobox-leucine zipper protein HOX1955.700%Swiss-ProtMedium
A2Z1U1Oryza sativa subsp. indicasp|A2Z1U1|HOX11_ORYSI Homeobox-leucine zipper protein HOX1160.000%Swiss-ProtMedium

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