TkA08G019860 | RubberDandelionOmics

Gene overview

TkA08G019860

Reference: TK1151 Chr: Chr08 Coordinates: 4959164-4963064 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2079 bp · TkA08G019860|TK1151|cDNA

TTCCTTTCCATTTTCATGTTTTTGTAAGACCTTTTGGTGCAGACACACACAACACACACCAGCCAGACGCCTCTCTGTCTCTCCTCTTTCTCTCTCTAGAAAACGATACTGGTGAGCCAATTTCCTCCTTCTGATCAATATAATCTCTGTTTTCAAAGCTCAAAACACCGAATTTTCCAAGATCGCATTAGAAGTTTGTGTTGAAGAATGTCGGGTGGTGGAACTCAAAACAGTTTACGGAAAGCTCTTGGAGCAATTAA...

CDS

Download CDS FASTA

1626 bp · TkA08G019860|TK1151|CDS

ATGTCGGGTGGTGGAACTCAAAACAGTTTACGGAAAGCTCTTGGAGCAATTAAGGACACTACAACTGTCAATATAGCTAAAGTTAGTAGTGACTACAAGGAATTGGATATAAATATTGTCAAGGCTACAAACCACGTTGAGCGCCCAGCAAAAGAAAAGTATATACGTGCTATATTTGCAGCCATCTCAGCTACAAGACCTCGAGCTGATGTCGCTTATTGCATACATGCTCTTGCAAGAAGATTGTCAAAGACACATAA...

Protein

Download Protein FASTA

541 aa · TkA08G019860|TK1151|PROTEIN

MSGGGTQNSLRKALGAIKDTTTVNIAKVSSDYKELDINIVKATNHVERPAKEKYIRAIFAAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFQEELLNYGRNRNHVLNLSYFKDDSSPNAWDYSGWVRTYALYLEERLECFRVLKYDVETDRPRTKDLDTPDLLEQLPALQQLLFRVLGCQPQGAAVNNFVIQLALSMVASESMKIYSAISDGSVNLVDKFFEMQRHDALRALDIYRRAGQQA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G019860`
TK1151 ID	TkA08G019860
OH-1004 ID	LXL04_018214
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G019860

Location Chr08:4959164-4963064 (-)

Description Similar to At5g35200: Putative clathrin assembly protein At5g35200

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g35200`	Putative clathrin assembly protein At5g35200.	No verified direct reference in this release
`At5g57200`	Putative clathrin assembly protein At5g57200.	No verified direct reference in this release
`At2g01600`	Putative clathrin assembly protein At2g01600.	No verified direct reference in this release
`At4g25940`	Putative clathrin assembly protein At4g25940.	No verified direct reference in this release
`At1g14910`	Putative clathrin assembly protein At1g14910.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018214 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006900 vesicle budding from membrane Biological Process

GO:0048268 clathrin coat assembly Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005905 clathrin-coated pit Cellular Component

GO:0009536 plastid Cellular Component

GO:0030136 clathrin-coated vesicle Cellular Component

KEGG gene cross-reference

ath:AT1G14910

ath:AT2G01600

ath:AT4G25940

ath:AT5G35200

ath:AT5G57200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.558

Rank 1 · TkA08G019860 · TK1151

Cytoplasm0.429

Rank 2 · TkA08G019860 · TK1151

Nucleus0.192

Rank 3 · TkA08G019860 · TK1151

Golgi apparatus0.053

Rank 4 · TkA08G019860 · TK1151

Endoplasmic reticulum0.040

Rank 5 · TkA08G019860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01417ENTH32-131 aa

PF07651ANTH34-300 aa

PF22703Cdc6_lid226-262 aa

PF03153TFIIA361-508 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G019860	`PF01417`	ENTH	32	131	0.012	16.4
TkA08G019860	`PF07651`	ANTH	34	300	1.8e-85	287.0
TkA08G019860	`PF22703`	Cdc6_lid	226	262	0.051	14.2
TkA08G019860	`PF03153`	TFIIA	361	508	0.49	11.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LHS0`	Arabidopsis thaliana	sp\|Q9LHS0\|CAP10_ARATH Putative clathrin assembly protein At5g35200	68.100%	Swiss-Prot	High
`Q9LVD8`	Arabidopsis thaliana	sp\|Q9LVD8\|CAP7_ARATH Putative clathrin assembly protein At5g57200	51.400%	Swiss-Prot	High
`Q8LBH2`	Arabidopsis thaliana	sp\|Q8LBH2\|CAP8_ARATH Putative clathrin assembly protein At2g01600	52.400%	Swiss-Prot	High
`Q8VYT2`	Arabidopsis thaliana	sp\|Q8VYT2\|CAP6_ARATH Putative clathrin assembly protein At4g25940	50.300%	Swiss-Prot	High
`P94017`	Arabidopsis thaliana	sp\|P94017\|CAP9_ARATH Putative clathrin assembly protein At1g14910	49.300%	Swiss-Prot	Medium

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