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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G017470
Reference: TK1151 Chr: Chr08 Coordinates: 4339659-4340264 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

606 bp · TkA08G017470|TK1151|cDNA

ATGGCACCAAAAAAATTATCCCAAAAAAGATCACTCAACTCTCAAAACAACCCTCAAAACAACCTTCAATTCAACCCTCAATACAATACTCAAGAACACCATCTCTTCTCACCTTCAACTCAAGTTTATCGTCCCATATTCGATCCATCACCACCCTTCAACCCTTACGCACCAAGAGATCAACAACTACAACATCTTCAACAAATTCAATACCAACACCAACAACAATTCCAAACCTTCGACCATGTTTTGCCATCATT...

CDS

Download CDS FASTA

606 bp · TkA08G017470|TK1151|CDS

ATGGCACCAAAAAAATTATCCCAAAAAAGATCACTCAACTCTCAAAACAACCCTCAAAACAACCTTCAATTCAACCCTCAATACAATACTCAAGAACACCATCTCTTCTCACCTTCAACTCAAGTTTATCGTCCCATATTCGATCCATCACCACCCTTCAACCCTTACGCACCAAGAGATCAACAACTACAACATCTTCAACAAATTCAATACCAACACCAACAACAATTCCAAACCTTCGACCATGTTTTGCCATCATT...

Protein

Download Protein FASTA

201 aa · TkA08G017470|TK1151|PROTEIN

MAPKKLSQKRSLNSQNNPQNNLQFNPQYNTQEHHLFSPSTQVYRPIFDPSPPFNPYAPRDQQLQHLQQIQYQHQQQFQTFDHVLPSFQSSHYFQQYSQSSQYYSQQQFASEYPSQTQPQPQTPVEEIESNKEYVSELEPEEETPQQRKGKGKATNERWTADQETELAKAWCGISEDSIKGKDQGRIQFWKKNHKKVQHCNG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G017470
TK1151 IDTkA08G017470
OH-1004 IDLXL04_015735
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)66.300
Protein coverage (%)TK1151 83.085 / OH-1004 22.005
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G017470
LocationChr08:4339659-4340264 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015735 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0090110 COPII-coated vesicle cargo loading Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0030127 COPII vesicle coat Cellular Component
GO:0070971 endoplasmic reticulum exit site Cellular Component
KEGG gene cross-reference
ath:AT1G05520
ath:AT2G21630
ath:AT3G23660
ath:AT4G14160
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957
Rank 1 · TkA08G017470 · TK1151
Cytoplasm0.215
Rank 2 · TkA08G017470 · TK1151
Mitochondrion0.016
Rank 3 · TkA08G017470 · TK1151
Cell membrane0.011
Rank 4 · TkA08G017470 · TK1151
Endoplasmic reticulum0.007
Rank 5 · TkA08G017470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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