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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G006290
Reference: TK1151 Chr: Chr08 Coordinates: 1603742-1607663 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2447 bp · TkA08G006290|TK1151|cDNA

GTGGAAGTGGAAGTGGACCATTTCCACCATTTTTTGAAAAAGTGGAGAAGGTGGAAGTGGCTTATGTGGCAGGTGATGTGGCAGAAAGTGGGGGTGGAAGTGCTTGACCCATACCCACCAGCCTAAAAGCTTAGCTTCTTTATTGATCGAAAACAACAAAAAGTTCAAACCTCATCAGTTTTACCCGATTTACATTCTTCAGTCTGCAAATTCCATTTAACGGCGACGTAAGATCATAGGTCTTTTGTGCGACATTTCTT...

CDS

Download CDS FASTA

1077 bp · TkA08G006290|TK1151|CDS

ATGGCTATAACCTCTGAAGAACACGATAATCTAACTGATGATTACCCTTTACTAACAAATCACCCGGAACCCCATGAAAACCACCAGATTATTGATGTAGAAAGAGGAAGCTCTGATGCTTCATCATCAGGGTCATCAAATGGACCAAATCCGAATCCACCTGGCAGAAGGGGCGAAAGGTGGAATCCATTCAACTCATTGCTATGGATTTCAATCGAAATGGTATTCACCACAGGACAAATCATTGCTGCCATTTTTGT...

Protein

Download Protein FASTA

358 aa · TkA08G006290|TK1151|PROTEIN

MAITSEEHDNLTDDYPLLTNHPEPHENHQIIDVERGSSDASSSGSSNGPNPNPPGRRGERWNPFNSLLWISIEMVFTTGQIIAAIFVLSISQHEQEHPQNPLFAWVIGYAAGCAATLPLLYWRYLHRNQSTGQRAAQLGQPRSERNTPPEPSSYITISFAPSSQDQTHQTSTTTTTTTTSSDTWNGLNVSGSNVSMLVDRFKMALDCFFAVWFVVGNVWIFGDQSSSSDAPNLYRLSIVFLGISCIGYAMPFILCGMICC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G006290
TK1151 IDTkA08G006290
OH-1004 IDLXL04_018311
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 95.200
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G006290
LocationChr08:1603742-1607663 (-)
DescriptionSimilar to At4g11680: E3 ubiquitin-protein ligase At4g11680
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g11680 Mediates E2-dependent protein ubiquitination in vitro. No verified direct reference in this release
At3g11110 RING-H2 finger protein ATL66. No verified direct reference in this release
At1g49850 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018311 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0032991 protein-containing complex Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G12760
ath:AT1G63170
ath:AT2G01735
ath:AT4G11680
mmu:225743
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.397
Rank 1 · TkA08G006290 · TK1151
Cell membrane0.281
Rank 2 · TkA08G006290 · TK1151
Endoplasmic reticulum0.206
Rank 3 · TkA08G006290 · TK1151
Cytoplasm0.174
Rank 4 · TkA08G006290 · TK1151
Golgi apparatus0.121
Rank 5 · TkA08G006290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26393Lart1_ADPRT67-97 aa
PF10277Frag187-135 aa
PF20058DUF645793-123 aa
PF01456Mucin160-182 aa
PF10277Frag1200-248 aa
PF26393Lart1_ADPRT227-272 aa
PF10277Frag1249-268 aa
PF13639zf-RING_2253-269 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G006290PF26393Lart1_ADPRT67970.2411.2
TkA08G006290PF10277Frag1871350.09912.9
TkA08G006290PF20058DUF6457931230.2412.0
TkA08G006290PF01456Mucin1601824.87.9
TkA08G006290PF10277Frag12002480.09912.9
TkA08G006290PF26393Lart1_ADPRT2272720.2411.2
TkA08G006290PF10277Frag12492680.09912.9
TkA08G006290PF13639zf-RING_22532691.4e-0938.8
TkA08G006290PF01456Mucin2572964.87.9
TkA08G006290PF00097zf-C3HC42602690.0004820.6
TkA08G006290PF13445zf-RING_UBOX2612650.005417.4
TkA08G006290PF12861zf-ANAPC113213570.1113.2
TkA08G006290PF13639zf-RING_23223561.4e-0938.8
TkA08G006290PF17123zf-RING_113223492.5e-0834.1
TkA08G006290PF13923zf-C3HC4_23223540.0001722.0
TkA08G006290PF00097zf-C3HC43223540.0004820.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93Z92Arabidopsis thalianasp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g1168041.000%Swiss-ProtLow
Q9SRM0Arabidopsis thalianasp|Q9SRM0|ATL66_ARATH RING-H2 finger protein ATL6642.900%Swiss-ProtLow
Q852U6Arabidopsis thalianasp|Q852U6|RHY1A_ARATH Probable E3 ubiquitin-protein ligase RHY1A34.200%Swiss-ProtLow

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