TkA07G444760 | RubberDandelionOmics

Gene overview

TkA07G444760

Reference: TK1151 Chr: Chr07 Coordinates: 112831452-112832633 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1122 bp · TkA07G444760|TK1151|cDNA

ATGGCATTACCCGCCACCATGAAAGTTCTCGGCTTGGTCGCCGGAGTTGTTTTGATTCTCTTAATGGGTATTTTATCAGAAATCAGCGTCGAGTTGCTCATTCGATTTTCCGTTCAATGCAAAGCAACATCATACGGCGAGGTGGTGGAGCAAGCATTAGGTTCGCCGGCGAGAATCATATCCGACGTGATGTCTGGTTCTCCGCGACATTCGGGGGTTATAATTCAATGGTTTGGAACCGGGATATGGGAGAATCGAAG...

CDS

Download CDS FASTA

1122 bp · TkA07G444760|TK1151|CDS

ATGGCATTACCCGCCACCATGAAAGTTCTCGGCTTGGTCGCCGGAGTTGTTTTGATTCTCTTAATGGGTATTTTATCAGAAATCAGCGTCGAGTTGCTCATTCGATTTTCCGTTCAATGCAAAGCAACATCATACGGCGAGGTGGTGGAGCAAGCATTAGGTTCGCCGGCGAGAATCATATCCGACGTGATGTCTGGTTCTCCGCGACATTCGGGGGTTATAATTCAATGGTTTGGAACCGGGATATGGGAGAATCGAAG...

Protein

Download Protein FASTA

373 aa · TkA07G444760|TK1151|PROTEIN

MALPATMKVLGLVAGVVLILLMGILSEISVELLIRFSVQCKATSYGEVVEQALGSPARIISDVMSGSPRHSGVIIQWFGTGIWENRRLVIFIVLIVFLAPLCALDKIESLSVTSGASVVLAVLFVIVASVVAFIMLVEGKTDPPRLIPDFSSKQAILDLLVVIPIMSNAYVCHFNIQPIYNELEGRSPQKMNKVGRLTTIICVLIYWSTAIAGYLLFGNNTEPDVLTNFDKPLPIRFSVGLSYLVRVGYIFHLVLVFPVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G444760`
TK1151 ID	TkA07G444760
OH-1004 ID	LXL04_031003
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.900
Protein coverage (%)	TK1151 100.000 / OH-1004 88.117 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G444760

Location Chr07:112831452-112832633 (+)

Description Similar to AVT6E: Amino acid transporter AVT6E

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80510`	Amino acid transporter AVT6E.	No verified direct reference in this release
`At3g30390`	Amino acid transporter AVT6A.	No verified direct reference in this release
`At5g38820`	Amino acid transporter AVT6B.	No verified direct reference in this release
`At3g56200`	Amino acid transporter AVT6C.	No verified direct reference in this release
`At2g40420`	Amino acid transporter AVT6D.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031003 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G80510

ath:AT2G40420

ath:AT3G30390

ath:AT3G56200

ath:AT5G38820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.496

Rank 1 · TkA07G444760 · TK1151

Lysosome / Vacuole0.177

Rank 2 · TkA07G444760 · TK1151

Endoplasmic reticulum0.155

Rank 3 · TkA07G444760 · TK1151

Cytoplasm0.142

Rank 4 · TkA07G444760 · TK1151

Golgi apparatus0.087

Rank 5 · TkA07G444760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490Aa_trans2-64 aa

PF01490Aa_trans76-366 aa

PF06749DUF1218104-139 aa

PF06749DUF1218194-217 aa

PF06749DUF1218281-310 aa

PF06749DUF1218348-373 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G444760	`PF01490`	Aa_trans	2	64	8.5e-46	157.2
TkA07G444760	`PF01490`	Aa_trans	76	366	8.5e-46	157.2
TkA07G444760	`PF06749`	DUF1218	104	139	2.0	9.6
TkA07G444760	`PF06749`	DUF1218	194	217	2.0	9.6
TkA07G444760	`PF06749`	DUF1218	281	310	2.0	9.6
TkA07G444760	`PF06749`	DUF1218	348	373	2.0	9.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M8L9`	Arabidopsis thaliana	sp\|Q9M8L9\|AVT6E_ARATH Amino acid transporter AVT6E	68.200%	Swiss-Prot	High
`Q9LI61`	Arabidopsis thaliana	sp\|Q9LI61\|AVT6A_ARATH Amino acid transporter AVT6A	38.700%	Swiss-Prot	Medium
`F4KBM7`	Arabidopsis thaliana	sp\|F4KBM7\|AVT6B_ARATH Amino acid transporter AVT6B	37.500%	Swiss-Prot	Medium
`Q9LYM2`	Arabidopsis thaliana	sp\|Q9LYM2\|AVT6C_ARATH Amino acid transporter AVT6C	35.700%	Swiss-Prot	Medium
`Q0WQJ3`	Arabidopsis thaliana	sp\|Q0WQJ3\|AVT6D_ARATH Amino acid transporter AVT6D	34.800%	Swiss-Prot	Medium

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