TkA07G437570 | RubberDandelionOmics

Gene overview

TkA07G437570

Reference: TK1151 Chr: Chr07 Coordinates: 110776562-110777227 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

324 bp · TkA07G437570|TK1151|cDNA

ATGATATCCCAACCACTGTCCACAGAAGCAAAGCTGACTGCCCAGAGCCAGAGGAAATGGTTACGGTCAGTGTTGACGGCTCTTTACTTAACCGAATCGGTAAAATCATGTCTTACCTTCGCCTCGGATCATCTAGGATCATCTGGAAAGATTCTTAAAAAGAAAAAGAAAGACAAGGATGCCAAAGTGTTTGCCGCTGCTTCGCGCGGGTGGAAGGACTGTTGCAGCAAAATACGAATTCCAGAAACCATCTTCGTGTC...

CDS

Download CDS FASTA

324 bp · TkA07G437570|TK1151|CDS

ATGATATCCCAACCACTGTCCACAGAAGCAAAGCTGACTGCCCAGAGCCAGAGGAAATGGTTACGGTCAGTGTTGACGGCTCTTTACTTAACCGAATCGGTAAAATCATGTCTTACCTTCGCCTCGGATCATCTAGGATCATCTGGAAAGATTCTTAAAAAGAAAAAGAAAGACAAGGATGCCAAAGTGTTTGCCGCTGCTTCGCGCGGGTGGAAGGACTGTTGCAGCAAAATACGAATTCCAGAAACCATCTTCGTGTC...

Protein

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107 aa · TkA07G437570|TK1151|PROTEIN

MISQPLSTEAKLTAQSQRKWLRSVLTALYLTESVKSCLTFASDHLGSSGKILKKKKKDKDAKVFAAASRGWKDCCSKIRIPETIFVSNDLHSRSNRVFNHFLTCKAT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G437570`
TK1151 ID	TkA07G437570
OH-1004 ID	LXL04_011192
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	62.500
Protein coverage (%)	TK1151 100.000 / OH-1004 56.566 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G437570`
Location	Chr07:110776562-110777227 (-)
Description	Similar to SMU2: Suppressor of mec-8 and unc-52 protein homolog 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_011192` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000278 mitotic cell cycle Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process GO:0008380 RNA splicing Biological Process GO:0034501 protein localization to kinetochore Biological Process GO:0000228 nuclear chromosome Cellular Component GO:0000922 spindle pole Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005694 chromosome Cellular Component GO:0016607 nuclear speck Cellular Component GO:0071005 U2-type precatalytic spliceosome Cellular Component
KEGG gene cross-reference	ath:AT2G26460 hsa:3550 mmu:24010 pon:100173452 rno:291659 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.390

Rank 1 · TkA07G437570 · TK1151

Cytoplasm0.386

Rank 2 · TkA07G437570 · TK1151

Mitochondrion0.202

Rank 3 · TkA07G437570 · TK1151

Cell membrane0.112

Rank 4 · TkA07G437570 · TK1151

Endoplasmic reticulum0.066

Rank 5 · TkA07G437570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19060DVNP3-35 aa

PF19060DVNP47-78 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G437570	`PF19060`	DVNP	3	35	0.38	11.9
TkA07G437570	`PF19060`	DVNP	47	78	0.38	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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