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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G397570
Reference: TK1151 Chr: Chr07 Coordinates: 99900025-99906568 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5130 bp · TkA07G397570|TK1151|cDNA

TACTTATAGAGAATCAAAAGTAAATAAACTTGAATTTCATCCAAAGTCACAATATATTTGTTTTGTGAATATATACACCCAAAGTTTTTTCTTTTATTACTATGCCGTACAAAATTCAACCCTTTTTCTCTCTCACTTCTTAAGTCGCGTTCGGGTCGAAATACGTCTCTTCTTGCTTATCGACGTGGTGCACAAATCCTGACCAAATCAAGGTTTTACCAGGGTAAATAAACGGAAGCTGAATCTTCATACAGATCGAG...

CDS

Download CDS FASTA

4419 bp · TkA07G397570|TK1151|CDS

ATGAATTTACAGACTCAAATGGCAGGACAGTTCTCAAGACAAGTTCCCAATCAATCTGGCACTTCATTACCTATTCAACAACAACAACAACAGAACATGATGCATAATTCTGAATCTTCCCATGCTTCACTAACCATGGAAACTGGTTTTGATAAAGCTCGAAGATTCATCCTAGATAGAATATATGAGTTCTTGATGCAAAGGCAACAAGCGCGTGAGATACCTCCAAATAATGTTTCGGATATTGTTAGACGATTGGA...

Protein

Download Protein FASTA

1472 aa · TkA07G397570|TK1151|PROTEIN

MNLQTQMAGQFSRQVPNQSGTSLPIQQQQQQNMMHNSESSHASLTMETGFDKARRFILDRIYEFLMQRQQAREIPPNNVSDIVRRLEEGLFKSATSKEEYMNLDTLEKRLHLLIRRPAQRYQQQQQQQQMNASTNTMIPTPGVPQSADVMVTSASGVNSGSYSMPMGNSQMMPTPGFNNSNPTTSNMSGDSTMVSQNQNQSQSQSQLQSQQQKQQQVVGGQNSRILHSLGSHMGVVGGIRSSLNQKAYGFQNGNNLGGMM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G397570
TK1151 IDTkA07G397570
OH-1004 IDLXL04_030328
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G397570
LocationChr07:99900025-99906568 (-)
DescriptionSimilar to HAC1: Histone acetyltransferase HAC1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79000 Acetyltransferase enzyme. No verified direct reference in this release
At1g16710 Acetyltransferase enzyme. No verified direct reference in this release
At3g12980 Acetyltransferase enzyme. No verified direct reference in this release
At1g55970 Acetyltransferase enzyme. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0137500 Acetyltransferase enzyme. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030328 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006473 protein acetylation Biological Process
GO:0009294 DNA-mediated transformation Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0048573 photoperiodism, flowering Biological Process
GO:0000123 histone acetyltransferase complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005667 transcription regulator complex Cellular Component
GO:0016592 mediator complex Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003713 transcription coactivator activity Molecular Function
KEGG gene cross-reference
ath:AT1G16710
ath:AT1G79000
dosa:Os02g0137500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.906
Rank 1 · TkA07G397570 · TK1151
Cytoplasm0.200
Rank 2 · TkA07G397570 · TK1151
Cell membrane0.028
Rank 3 · TkA07G397570 · TK1151
Mitochondrion0.022
Rank 4 · TkA07G397570 · TK1151
Endoplasmic reticulum0.012
Rank 5 · TkA07G397570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16987KIX_253-102 aa
PF09606Med15_N81-124 aa
PF29847KAT3191-216 aa
PF02135zf-TAZ476-545 aa
PF00628PHD510-529 aa
PF00628PHD739-747 aa
PF00569ZZ767-773 aa
PF31197PHD_JHD1797-819 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G397570PF16987KIX_2531020.02915.0
TkA07G397570PF09606Med15_N811240.03114.7
TkA07G397570PF29847KAT31912163.5e-77260.6
TkA07G397570PF02135zf-TAZ4765456.9e-2897.6
TkA07G397570PF00628PHD5105295e-0627.2
TkA07G397570PF00628PHD7397475e-0627.2
TkA07G397570PF00569ZZ7677732e-0525.0
TkA07G397570PF31197PHD_JHD17978190.001219.4
TkA07G397570PF00628PHD7988385e-0627.2
TkA07G397570PF23570PHD_P3008028220.03314.8
TkA07G397570PF00569ZZ8058122e-0525.0
TkA07G397570PF00569ZZ8328392e-0525.0
TkA07G397570PF29847KAT389911283.5e-77260.6
TkA07G397570PF00569ZZ117512082e-0525.0
TkA07G397570PF02135zf-TAZ117912066.9e-2897.6
TkA07G397570PF31197PHD_JHD1117912000.001219.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5X9Arabidopsis thalianasp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC167.400%Swiss-ProtHigh
Q9FWQ5Arabidopsis thalianasp|Q9FWQ5|HAC12_ARATH Histone acetyltransferase HAC1268.600%Swiss-ProtMedium
Q9LE42Arabidopsis thalianasp|Q9LE42|HAC5_ARATH Histone acetyltransferase HAC560.500%Swiss-ProtMedium
Q9LG11Arabidopsis thalianasp|Q9LG11|HAC4_ARATH Histone acetyltransferase HAC456.600%Swiss-ProtMedium
Q6YXY2Oryza sativa subsp. japonicasp|Q6YXY2|HACL1_ORYSJ Probable histone acetyltransferase HAC-like 164.100%Swiss-ProtMedium

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