TkA07G373540 | RubberDandelionOmics

Gene overview

TkA07G373540

Reference: TK1151 Chr: Chr07 Coordinates: 93702228-93709564 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1349 bp · TkA07G373540|TK1151|cDNA

AAAATCTTGGATATGCTTAGAATCATGTATGTCTATTACGTAATCAATTGGCTATAAATAGGAACCACAGGCCAGCAGCTAAAAGTCACAAGTCGACCTAAACTTGTAGCTATGGCTTTCCTCAGAGCATCATCCCTACCAGCACTCATTTTTTTAGTATTATCATGTAACCTGAGAGCTTCAGAAGCTCAGACACCGGCACCGGCACCGGGTCTGTCATATACATTCTACCGGACTACTTGTCCACAGCTTGAATCCAT...

CDS

Download CDS FASTA

1056 bp · TkA07G373540|TK1151|CDS

ATGGCTTTCCTCAGAGCATCATCCCTACCAGCACTCATTTTTTTAGTATTATCATGTAACCTGAGAGCTTCAGAAGCTCAGACACCGGCACCGGCACCGGGTCTGTCATATACATTCTACCGGACTACTTGTCCACAGCTTGAATCCATCGTACGGACACAACTTCAGACGGTTTTCAACTCTGATATTGGCCAAGCTGCTGGCTTGCTCCGACTTCACTTCCATGATTGCTTTGTTCAAGGGTGTGATGGTTCGGTGTT...

Protein

Download Protein FASTA

351 aa · TkA07G373540|TK1151|PROTEIN

MAFLRASSLPALIFLVLSCNLRASEAQTPAPAPGLSYTFYRTTCPQLESIVRTQLQTVFNSDIGQAAGLLRLHFHDCFVQGCDGSVLLDGSASGPSEKDAPPNLSLRAQAFVIIENLRRLVHNACNQTVSCSDLTALAARDAVFLSGGPNYSIPLGRRDGITFATRNVTLANLPPPTANTTTLLNSLSTKGFTPTDVVALSGGHTIGIAHCTSFTGRLFPTRDPTMDQTFFNNLRLTCPTNVTDNTTFMDIRSPNVFDNR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G373540`
TK1151 ID	TkA07G373540
OH-1004 ID	LXL04_030059
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 64.522 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G373540

Location Chr07:93702228-93709564 (+)

Description Similar to PER12: Peroxidase 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71695`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g33420`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g06720`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030059 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002215 defense response to nematode Biological Process

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009908 flower development Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0080001 mucilage extrusion from seed coat Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G71695

ath:AT2G18150

ath:AT4G33420

ath:AT5G06720

sbi:8074114

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.489

Rank 1 · TkA07G373540 · TK1151

Cell membrane0.130

Rank 2 · TkA07G373540 · TK1151

Lysosome / Vacuole0.095

Rank 3 · TkA07G373540 · TK1151

Cytoplasm0.088

Rank 4 · TkA07G373540 · TK1151

Endoplasmic reticulum0.086

Rank 5 · TkA07G373540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase51-292 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G373540	`PF00141`	peroxidase	51	292	2.3e-81	273.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q96520`	Arabidopsis thaliana	sp\|Q96520\|PER12_ARATH Peroxidase 12	60.100%	Swiss-Prot	High
`Q9SZB9`	Arabidopsis thaliana	sp\|Q9SZB9\|PER47_ARATH Peroxidase 47	45.400%	Swiss-Prot	Medium
`Q42578`	Arabidopsis thaliana	sp\|Q42578\|PER53_ARATH Peroxidase 53	42.400%	Swiss-Prot	Medium

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