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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G339600
Reference: TK1151 Chr: Chr07 Coordinates: 84809460-84810558 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

630 bp · TkA07G339600|TK1151|cDNA

ATGGAGGCAATGGAAATTCACCATACGACTGTTCACGAACTTTCACTATTGACGGACTATGTTAAATGGTGGAACATCACATGTATTCGAGTGATTCATATGTGGAAAGATGATGACAATAAGAGATGGCTTTTGTGGTTAATTGATGTCAAAAGGGACCAAATGTTGGCAATTATCCCAGAAGCCATAGATCGATTATTTAACCACCTGCATTTTAGGGGCAATATTTTCATCTTGAACCACTTTCGTGTTGAGAACTT...

CDS

Download CDS FASTA

630 bp · TkA07G339600|TK1151|CDS

ATGGAGGCAATGGAAATTCACCATACGACTGTTCACGAACTTTCACTATTGACGGACTATGTTAAATGGTGGAACATCACATGTATTCGAGTGATTCATATGTGGAAAGATGATGACAATAAGAGATGGCTTTTGTGGTTAATTGATGTCAAAAGGGACCAAATGTTGGCAATTATCCCAGAAGCCATAGATCGATTATTTAACCACCTGCATTTTAGGGGCAATATTTTCATCTTGAACCACTTTCGTGTTGAGAACTT...

Protein

Download Protein FASTA

209 aa · TkA07G339600|TK1151|PROTEIN

MEAMEIHHTTVHELSLLTDYVKWWNITCIRVIHMWKDDDNKRWLLWLIDVKRDQMLAIIPEAIDRLFNHLHFRGNIFILNHFRVENFHYDHPKKYPTHWMHARKDSKRRKTIWMVYDKIQVQGQLWMFWKIKDLHGTLRCTYTCIHGHRSFFVMLSSARNRLNQLRLRIRCKVESKRGRKQRNISDHPVRARALPLRGRAFGSDESSRF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G339600
TK1151 IDTkA07G339600
OH-1004 IDLXL04_014191
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)92.800
Protein coverage (%)TK1151 39.713 / OH-1004 15.257
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G339600
LocationChr07:84809460-84810558 (-)
DescriptionSimilar to IDM2: Increased DNA methylation 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014191 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0007035 vacuolar acidification Biological Process
GO:0009630 gravitropism Biological Process
GO:0009660 amyloplast organization Biological Process
GO:0009959 negative gravitropism Biological Process
GO:0032880 regulation of protein localization Biological Process
GO:0070070 proton-transporting V-type ATPase complex assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009705 plant-type vacuole membrane Cellular Component
KEGG gene cross-reference
ath:AT1G20870
ath:AT1G54840
ath:AT2G36810
hsa:1657
mmu:240283
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.651
Rank 1 · TkA07G339600 · TK1151
Cytoplasm0.288
Rank 2 · TkA07G339600 · TK1151
Mitochondrion0.070
Rank 3 · TkA07G339600 · TK1151
Cell membrane0.063
Rank 4 · TkA07G339600 · TK1151
Endoplasmic reticulum0.051
Rank 5 · TkA07G339600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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