Gene Card
Gene overview
cDNA / CDS / Protein Sequences
480 bp · TkA07G327580|TK1151|cDNA
ATGCATGACCTAGAACTAGACTTACAAGATGTGGATACCAAAATTCGTCGAACAGAAGCTACATTGAATGAACAACGCAGGCTTCAAAATCTGGTGGCCAAAAAGACAGTTGAAAGAAGCACTCTGGTTCCGGAGCAAGAGCAGCGGTATAGTGATCTGGCAGAAGAGAATGAGGATCCTATTGAAGATTTAATGGAATGGAATGGGAAGTTCAGGGAAAGAATAGCAGATCTTGAAGATAAAATTGAAAAGTTAGAGAG...
480 bp · TkA07G327580|TK1151|CDS
ATGCATGACCTAGAACTAGACTTACAAGATGTGGATACCAAAATTCGTCGAACAGAAGCTACATTGAATGAACAACGCAGGCTTCAAAATCTGGTGGCCAAAAAGACAGTTGAAAGAAGCACTCTGGTTCCGGAGCAAGAGCAGCGGTATAGTGATCTGGCAGAAGAGAATGAGGATCCTATTGAAGATTTAATGGAATGGAATGGGAAGTTCAGGGAAAGAATAGCAGATCTTGAAGATAAAATTGAAAAGTTAGAGAG...
Protein
Download Protein FASTA159 aa · TkA07G327580|TK1151|PROTEIN
MHDLELDLQDVDTKIRRTEATLNEQRRLQNLVAKKTVERSTLVPEQEQRYSDLAEENEDPIEDLMEWNGKFRERIADLEDKIEKLERDKTNIEAKSSRCQPQINEYIKNVGKLQAEYDNYTSLKKERDSTVQELYRQHNLGSLPKTPFSNEVASNHIAA
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G327580 |
|---|---|
| TK1151 ID | TkA07G327580 |
| OH-1004 ID | LXL04_004916 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 96.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G327580 |
|---|---|
| Location | Chr07:81929155-81929804 (+) |
| Description | Similar to RAD50: DNA repair protein RAD50 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000722 telomere maintenance via recombination Biological Process GO:0000723 telomere maintenance Biological Process GO:0006302 double-strand break repair Biological Process GO:0006312 mitotic recombination Biological Process GO:0007004 telomere maintenance via telomerase Biological Process GO:0016233 telomere capping Biological Process GO:0070192 chromosome organization involved in meiotic cell cycle Biological Process GO:0000794 condensed nuclear chromosome Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0030870 Mre11 complex Cellular Component GO:0003691 double-stranded telomeric DNA binding Molecular Function |
| KEGG gene cross-reference | ath:AT2G31970 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF10805DUF27301-29 aaPF25450Rab11-FIP32-116 aaPF10473CENP-F_leu_zip2-64 aaPF08614ATG162-66 aaPF07321YscO3-59 aaPF27569SCAR_helical3-30 aaPF01920Prefoldin_23-24 aaPF19111DUF57983-35 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G327580 | PF10805 | DUF2730 | 1 | 29 | 0.13 | 13.2 |
| TkA07G327580 | PF25450 | Rab11-FIP3 | 2 | 116 | 0.0012 | 19.8 |
| TkA07G327580 | PF10473 | CENP-F_leu_zip | 2 | 64 | 0.019 | 15.8 |
| TkA07G327580 | PF08614 | ATG16 | 2 | 66 | 0.67 | 10.8 |
| TkA07G327580 | PF07321 | YscO | 3 | 59 | 0.0082 | 16.9 |
| TkA07G327580 | PF27569 | SCAR_helical | 3 | 30 | 0.033 | 14.6 |
| TkA07G327580 | PF01920 | Prefoldin_2 | 3 | 24 | 0.086 | 13.5 |
| TkA07G327580 | PF19111 | DUF5798 | 3 | 35 | 0.89 | 10.5 |
| TkA07G327580 | PF10779 | XhlA | 3 | 24 | 1.0 | 10.3 |
| TkA07G327580 | PF17078 | SHE3 | 3 | 135 | 1.6 | 9.1 |
| TkA07G327580 | PF28934 | CCDC160 | 3 | 49 | 2.1 | 8.8 |
| TkA07G327580 | PF10211 | Ax_dynein_light | 3 | 35 | 2.6 | 8.8 |
| TkA07G327580 | PF00435 | Spectrin | 4 | 27 | 0.014 | 16.5 |
| TkA07G327580 | PF04012 | PspA_IM30 | 4 | 33 | 0.015 | 15.6 |
| TkA07G327580 | PF23649 | FKBP15 | 4 | 27 | 0.054 | 13.8 |
| TkA07G327580 | PF07888 | CALCOCO1 | 4 | 134 | 0.15 | 11.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.