Gene Card
Gene overview
cDNA / CDS / Protein Sequences
636 bp · TkA07G223050|TK1151|cDNA
ATGAACCTAATATTCTATGGTGTTACAGGGATAAACTTGAACTTAGCAGTCATAAGAAAAAACGGGTCAAGCACCAAATCTTCAAATCAAATTCCATCATATCTTCTACATATCCATACTCAAATTCTCCTTTTTTGCCTTCAGGATTTTGAGGCCTTGACACCAAATCTTCTAGCAAGAACCATAGAAACAGTAGAAGGTGGTGGATTGATAGTTCTAATGCTTCGTTCTTTGTCTTCTCTCACTAGTCTCTACACCAT...
636 bp · TkA07G223050|TK1151|CDS
ATGAACCTAATATTCTATGGTGTTACAGGGATAAACTTGAACTTAGCAGTCATAAGAAAAAACGGGTCAAGCACCAAATCTTCAAATCAAATTCCATCATATCTTCTACATATCCATACTCAAATTCTCCTTTTTTGCCTTCAGGATTTTGAGGCCTTGACACCAAATCTTCTAGCAAGAACCATAGAAACAGTAGAAGGTGGTGGATTGATAGTTCTAATGCTTCGTTCTTTGTCTTCTCTCACTAGTCTCTACACCAT...
Protein
Download Protein FASTA211 aa · TkA07G223050|TK1151|PROTEIN
MNLIFYGVTGINLNLAVIRKNGSSTKSSNQIPSYLLHIHTQILLFCLQDFEALTPNLLARTIETVEGGGLIVLMLRSLSSLTSLYTMVMPNTGIFPKKYMLESAIIFVVASSTNKEDTKFKRFWIQSNPRKCSSGEDVQVVENGDVEMSKFKDGNHMFYYGSVTTEFATESLLRILQRKDSYGFYNGSVPTDFATEYIGYGIKSVAALQRK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G223050 |
|---|---|
| TK1151 ID | TkA07G223050 |
| OH-1004 ID | LXL04_035367 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 99.100 |
| Protein coverage (%) | TK1151 51.659 / OH-1004 25.173Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G223050 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:55941591-55942881 (+) | |||||||||
| Description | Similar to VHA-d1: V-type proton ATPase subunit d1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006879 intracellular iron ion homeostasis Biological Process GO:0007034 vacuolar transport Biological Process GO:0007035 vacuolar acidification Biological Process GO:0036295 cellular response to increased oxygen levels Biological Process GO:1902600 proton transmembrane transport Biological Process GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain Cellular Component GO:0000325 plant-type vacuole Cellular Component GO:0005765 lysosomal membrane Cellular Component GO:0005769 early endosome Cellular Component GO:0005773 vacuole Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G28710 ath:AT3G28715 ddi:DDB_G0273071 ddi:DDB_G0273657 dme:Dmel_CG2934 dosa:Os01g0587000 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08351TmcA_N51-83 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G223050 | PF08351 | TmcA_N | 51 | 83 | 2.2e-05 | 24.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.