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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G148400
Reference: TK1151 Chr: Chr07 Coordinates: 38298772-38300004 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1233 bp · TkA07G148400|TK1151|cDNA

ATGAAGAAATCCGGTTGTGTCCCTAATGTCTGTACTTATAATGCAATTCTTGGAATGTTAGGTCGAAAATCCCGGTCCGAAGACATGATGGAGATTCTTCTCGATATGAAATCGAATCGAATTTCACCTAACCGTGTCACTTGGAACACAATGCTTGCTATGTGTGGGCAAAAGGGTATGCATCTTTATATGAATTGGGTATTACGTGAGATGAAAAGTTGTGGTTTTGAGCCAGACAGAGACACGTTCAACACATTGAT...

CDS

Download CDS FASTA

1233 bp · TkA07G148400|TK1151|CDS

ATGAAGAAATCCGGTTGTGTCCCTAATGTCTGTACTTATAATGCAATTCTTGGAATGTTAGGTCGAAAATCCCGGTCCGAAGACATGATGGAGATTCTTCTCGATATGAAATCGAATCGAATTTCACCTAACCGTGTCACTTGGAACACAATGCTTGCTATGTGTGGGCAAAAGGGTATGCATCTTTATATGAATTGGGTATTACGTGAGATGAAAAGTTGTGGTTTTGAGCCAGACAGAGACACGTTCAACACATTGAT...

Protein

Download Protein FASTA

410 aa · TkA07G148400|TK1151|PROTEIN

MKKSGCVPNVCTYNAILGMLGRKSRSEDMMEILLDMKSNRISPNRVTWNTMLAMCGQKGMHLYMNWVLREMKSCGFEPDRDTFNTLISAYGRCGLEIDAGEVYKEMIKVGFNPCVTTYNALLNALARKGDWKAGESVILDMKSKGFKPSETSYSLMLHCYSKGQNLKGLDVMAKEIYEGRIFPSWMLLRTLILANFKCRYLSGMEKAFQELQKHGYKPDLVIFNSMLSIYARNKIYDRARKILDLIHENGLQPDLVTFNT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G148400
TK1151 IDTkA07G148400
OH-1004 IDLXL04_028380
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)97.100
Protein coverage (%)TK1151 8.537 / OH-1004 4.127
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G148400
LocationChr07:38298772-38300004 (+)
DescriptionSimilar to At2g18940: Pentatricopeptide repeat-containing protein At2g18940, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028380 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT2G18940
ath:AT5G02860
zma:100302579
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.760
Rank 1 · TkA07G148400 · TK1151
Plastid0.114
Rank 2 · TkA07G148400 · TK1151
Nucleus0.089
Rank 3 · TkA07G148400 · TK1151
Cytoplasm0.031
Rank 4 · TkA07G148400 · TK1151
Cell membrane0.009
Rank 5 · TkA07G148400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_21-20 aa
PF13812PPR_31-21 aa
PF06239ECSIT_N1-25 aa
PF12854PPR_15-28 aa
PF29978ATP18_TPR5-60 aa
PF13041PPR_28-55 aa
PF19189Mtf29-51 aa
PF23276TPR_2411-106 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G148400PF13041PPR_21208.5e-77253.8
TkA07G148400PF13812PPR_31211.9e-62208.0
TkA07G148400PF06239ECSIT_N1250.008316.1
TkA07G148400PF12854PPR_15283.2e-58193.8
TkA07G148400PF29978ATP18_TPR5605.9e-0730.2
TkA07G148400PF13041PPR_28558.5e-77253.8
TkA07G148400PF19189Mtf29510.003118.0
TkA07G148400PF23276TPR_24111067e-2278.5
TkA07G148400PF01535PPR12402.8e-59194.0
TkA07G148400PF28737VPS18_solenoid_2nd13600.2611.9
TkA07G148400PF17177PPR_long22927.4e-2381.7
TkA07G148400PF29070MSC6_N221691.9e-2177.4
TkA07G148400PF13812PPR_327571.9e-62208.0
TkA07G148400PF06239ECSIT_N27620.008316.1
TkA07G148400PF01696Adeno_E1B_55K29990.001518.0
TkA07G148400PF12854PPR_141593.2e-58193.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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