TkA07G148330 | RubberDandelionOmics

Gene overview

TkA07G148330

Reference: TK1151 Chr: Chr07 Coordinates: 38269753-38272500 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

781 bp · TkA07G148330|TK1151|cDNA

ATGGAAGTCCCCAAGGATCAGATGTCTATTCTCCTCGATTGCGGTCTTTATAACTCTGCTCAAATGCTCGTAAATCCCCTTTCCTCTGCCATTGCCACTATCCAGTCGGAGTCGGATATATCTCTGAGTGGTATCAGATGCTACTCATCTGCAGGAACCCCTGCACATATAGTGATTGGAATGCCAGCTCTGTCACCTACAATGACTCAAGGTAACATTGCAAAGTGGTGGAAGAAAGAAGGAGATAAGGACCAGGGGAA...

CDS

Download CDS FASTA

645 bp · TkA07G148330|TK1151|CDS

ATGGAAGTCCCCAAGGATCAGATGTCTATTCTCCTCGATTGCGGTCTTTATAACTCTGCTCAAATGCTCGTAAATCCCCTTTCCTCTGCCATTGCCACTATCCAGTCGGAGTCGGATATATCTCTGAGTGGTATCAGATGCTACTCATCTGCAGGAACCCCTGCACATATAGTGATTGGAATGCCAGCTCTGTCACCTACAATGACTCAAGGTAACATTGCAAAGTGGTGGAAGAAAGAAGGAGATAAGGACCAGGGGAA...

Protein

Download Protein FASTA

214 aa · TkA07G148330|TK1151|PROTEIN

MEVPKDQMSILLDCGLYNSAQMLVNPLSSAIATIQSESDISLSGIRCYSSAGTPAHIVIGMPALSPTMTQGNIAKWWKKEGDKDQGNFARWLKKEGDKIEVGDIICEIETDKATLEFECLEEGYLAKIIAPEGSKNVLVGQPIAITVEDQADVEKVKSSSFSGDKAAKEAPPPHHATRDDVDLCMQLILDRALGLPLERPKSVTMEWLENKCKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G148330`
TK1151 ID	TkA07G148330
OH-1004 ID	LXL04_021720
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	64.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G148330

Location Chr07:38269753-38272500 (+)

Description Similar to LTA3: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52200`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release
`At3g13930`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release
`At1g54220`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021720 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006006 glucose metabolic process Biological Process

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0006099 tricarboxylic acid cycle Biological Process

GO:0042867 pyruvate catabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0045254 pyruvate dehydrogenase complex Cellular Component

GO:0120212 sperm head-tail coupling apparatus Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G52200

hsa:1737

mmu:235339

rno:81654

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.670

Rank 1 · TkA07G148330 · TK1151

Plastid0.311

Rank 2 · TkA07G148330 · TK1151

Cytoplasm0.075

Rank 3 · TkA07G148330 · TK1151

Nucleus0.035

Rank 4 · TkA07G148330 · TK1151

Extracellular0.020

Rank 5 · TkA07G148330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00364Biotin_lipoyl59-83 aa

PF25997BSH_YhbJ69-83 aa

PF26018BSH_RND_rel70-83 aa

PF25997BSH_YhbJ85-147 aa

PF00364Biotin_lipoyl86-144 aa

PF26018BSH_RND_rel90-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G148330	`PF00364`	Biotin_lipoyl	59	83	2.2e-18	66.6
TkA07G148330	`PF25997`	BSH_YhbJ	69	83	0.00038	21.2
TkA07G148330	`PF26018`	BSH_RND_rel	70	83	0.00046	20.7
TkA07G148330	`PF25997`	BSH_YhbJ	85	147	0.00038	21.2
TkA07G148330	`PF00364`	Biotin_lipoyl	86	144	2.2e-18	66.6
TkA07G148330	`PF26018`	BSH_RND_rel	90	126	0.00046	20.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WQF7`	Arabidopsis thaliana	sp\|Q0WQF7\|ODP21_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial	61.700%	Swiss-Prot	Medium
`Q8RWN9`	Arabidopsis thaliana	sp\|Q8RWN9\|ODP22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial	52.400%	Swiss-Prot	Medium
`Q5M729`	Arabidopsis thaliana	sp\|Q5M729\|ODP23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial	51.600%	Swiss-Prot	Medium

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