TkA07G052960 | RubberDandelionOmics

Gene overview

TkA07G052960

Reference: TK1151 Chr: Chr07 Coordinates: 14110377-14113527 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1026 bp · TkA07G052960|TK1151|cDNA

ATGTTGTTGTTGATGAAGAAGCCATTAATGCAAAGCTTCAGCAAAAAATCATGCTTGATAATCTTGATCGAAGTTGGATATGTTATGGAGTTTTATAAAAGCGCATTTGAATTCAAGGATTCTTGTTTTTCTTTCAAGCTGCAAGCAGGGAAAGGCAGCGAGAGCCTCGTCGCCGCCATGAATATGATGGAAGAAGGGCAAAATCAAATCAAGTTTGCCACAAAAGGGATAAAAGAAGAAATCATGGAGGAGAGAAGAAA...

CDS

Download CDS FASTA

1026 bp · TkA07G052960|TK1151|CDS

ATGTTGTTGTTGATGAAGAAGCCATTAATGCAAAGCTTCAGCAAAAAATCATGCTTGATAATCTTGATCGAAGTTGGATATGTTATGGAGTTTTATAAAAGCGCATTTGAATTCAAGGATTCTTGTTTTTCTTTCAAGCTGCAAGCAGGGAAAGGCAGCGAGAGCCTCGTCGCCGCCATGAATATGATGGAAGAAGGGCAAAATCAAATCAAGTTTGCCACAAAAGGGATAAAAGAAGAAATCATGGAGGAGAGAAGAAA...

Protein

Download Protein FASTA

341 aa · TkA07G052960|TK1151|PROTEIN

MLLLMKKPLMQSFSKKSCLIILIEVGYVMEFYKSAFEFKDSCFSFKLQAGKGSESLVAAMNMMEEGQNQIKFATKGIKEEIMEERRKDRISGLYDTRSKSQINSFIRYALSCNVEDLNIKIWNAELRADKFILDQVFFLKSCFRDLRLSGFILNPIGAINWKNLRNLWISEASLDEELIENILSGSPVLETLSLDYCYGYKQLNITSKSVKNFVFHGYYWVPPDDKYDDFTHTIEINASNILSLTIKEDLLLWKLFLVDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G052960`
TK1151 ID	TkA07G052960
OH-1004 ID	LXL04_027355
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	54.700
Protein coverage (%)	TK1151 68.915 / OH-1004 65.169 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G052960

Location Chr07:14110377-14113527 (+)

Description Similar to At5g02700: Putative F-box/LRR-repeat protein At5g02700

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02930`	Putative F-box/LRR-repeat protein At5g02930.	No verified direct reference in this release
`At3g18150`	Putative F-box/LRR-repeat protein At3g18150.	No verified direct reference in this release
`At5g02700`	Putative F-box/LRR-repeat protein At5g02700.	No verified direct reference in this release
`At3g28410`	Putative F-box/LRR-repeat protein At3g28410.	No verified direct reference in this release
`At5g02920`	F-box/LRR-repeat protein 25.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027355 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT1G49610

ath:AT3G18150

ath:AT3G28410

ath:AT5G02700

ath:AT5G03100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.816

Rank 1 · TkA07G052960 · TK1151

Cytoplasm0.217

Rank 2 · TkA07G052960 · TK1151

Cell membrane0.048

Rank 3 · TkA07G052960 · TK1151

Endoplasmic reticulum0.042

Rank 4 · TkA07G052960 · TK1151

Mitochondrion0.019

Rank 5 · TkA07G052960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622LRR_At1g61320_AtMIF197-326 aa

PF24758LRR_At5g56370107-216 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G052960	`PF23622`	LRR_At1g61320_AtMIF1	97	326	4.3e-08	33.6
TkA07G052960	`PF24758`	LRR_At5g56370	107	216	5.5e-09	36.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LYZ2`	Arabidopsis thaliana	sp\|Q9LYZ2\|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930	36.000%	Swiss-Prot	Low
`Q9LV26`	Arabidopsis thaliana	sp\|Q9LV26\|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150	31.400%	Swiss-Prot	Low
`Q9LZ15`	Arabidopsis thaliana	sp\|Q9LZ15\|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700	36.100%	Swiss-Prot	Low
`Q9LSJ3`	Arabidopsis thaliana	sp\|Q9LSJ3\|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410	35.100%	Swiss-Prot	Low
`Q1PE04`	Arabidopsis thaliana	sp\|Q1PE04\|FBL25_ARATH F-box/LRR-repeat protein 25	31.800%	Swiss-Prot	Low

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