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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G042930
Reference: TK1151 Chr: Chr07 Coordinates: 11451966-11452985 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

936 bp · TkA07G042930|TK1151|cDNA

AAAAGATTTGCAAGAAACACAAACAACGAAAGATTAATAGCAGGTCTTCCAACAATGGCGGCAATGCATCTCACAAAAACAGGAATCTTTAACATCTCTAGAGCAAATATCCCTCGTTTAACTTCTCTTTCGTTCCCTCAAAAAGCTTCTAGGGTTTGCTTCACTTCCGCTTCCAAACATTCTCAGGGAAGACATGCAAGTGAAGAAACCAACAATGGGTATAACGCAGATGAAACAGTCGGCTACTCCAGTGGTAACAT...

CDS

Download CDS FASTA

843 bp · TkA07G042930|TK1151|CDS

ATGGCGGCAATGCATCTCACAAAAACAGGAATCTTTAACATCTCTAGAGCAAATATCCCTCGTTTAACTTCTCTTTCGTTCCCTCAAAAAGCTTCTAGGGTTTGCTTCACTTCCGCTTCCAAACATTCTCAGGGAAGACATGCAAGTGAAGAAACCAACAATGGGTATAACGCAGATGAAACAGTCGGCTACTCCAGTGGTAACATGGGAAAAGATCCAAAAGACAAAATGAAAGAAGGTAAAGAGAGAATGAAAGAAGG...

Protein

Download Protein FASTA

280 aa · TkA07G042930|TK1151|PROTEIN

MAAMHLTKTGIFNISRANIPRLTSLSFPQKASRVCFTSASKHSQGRHASEETNNGYNADETVGYSSGNMGKDPKDKMKEGKERMKEGAGEMKDETMNSMKESKERMKDKATEMKDETKNSMKEGKEKMKEKATEIKDKANDMAGRAADQAGDMKEKAKEKSYEMKESGKETANMAADKAGEGTNKAAEIAKAAKDKTMEAAGAVAEKTKQTVAGAWDAAKDTSQKIKETVVGTSSSSSDEDDWGDDRKGNKKVVDEEVEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G042930
TK1151 IDTkA07G042930
OH-1004 IDLXL04_027263
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)46.000
Protein coverage (%)TK1151 35.000 / OH-1004 48.663
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G042930
LocationChr07:11451966-11452985 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027263 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.729
Rank 1 · TkA07G042930 · TK1151
Cytoplasm0.211
Rank 2 · TkA07G042930 · TK1151
Nucleus0.132
Rank 3 · TkA07G042930 · TK1151
Cell membrane0.079
Rank 4 · TkA07G042930 · TK1151
Plastid0.037
Rank 5 · TkA07G042930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02601Exonuc_VII_L61-162 aa
PF28971COR1566-152 aa
PF12732YtxH70-120 aa
PF27970LEA1_2_D7_KIN274-120 aa
PF28479At4g1323075-129 aa
PF02987LEA_475-101 aa
PF01442Apolipoprotein76-211 aa
PF07464ApoLp-III76-228 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G042930PF02601Exonuc_VII_L611622.68.2
TkA07G042930PF28971COR15661520.1412.8
TkA07G042930PF12732YtxH701202.3e-0628.7
TkA07G042930PF27970LEA1_2_D7_KIN2741200.05714.8
TkA07G042930PF28479At4g13230751291.8e-1660.8
TkA07G042930PF02987LEA_4751010.004517.5
TkA07G042930PF01442Apolipoprotein762110.0009919.6
TkA07G042930PF07464ApoLp-III762283.98.3
TkA07G042930PF29017PCP52771075.28.3
TkA07G042930PF05478Prominin831496.35.5
TkA07G042930PF02987LEA_4861230.004517.5
TkA07G042930PF27970LEA1_2_D7_KIN2861440.05714.8
TkA07G042930PF30406ApoB100_arm_9ins961583.97.1
TkA07G042930PF02987LEA_41071450.004517.5
TkA07G042930PF12732YtxH1221662.3e-0628.7
TkA07G042930PF29017PCP521271465.28.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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