TkA07G041310 | RubberDandelionOmics

Gene overview

TkA07G041310

Reference: TK1151 Chr: Chr07 Coordinates: 11063897-11070345 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

6077 bp · TkA07G041310|TK1151|cDNA

GGAACTACATACTAACATAAAACAACGACGATCAAAATAATCCATATGCGTATCAATTACAAAGATTTCCAAAAGAAAAAAGATGCGAGTATTGCTTACTTTCATTGAATTCAAGTAACCGATGAGAAACAAAACCCCATCAGTCCTCTCTTATCTTCTTCCGATCTACTTCCCCACCTTCTCCCCCTCAACGTGCCCCTCACGTGGCAGTGTGCCACTATTCCTGTAACTTAAAGTTACAAGTAACAAACACTCCTCAA...

CDS

Download CDS FASTA

3033 bp · TkA07G041310|TK1151|CDS

ATGGTACACGGTTATATCCGCTTTAGTCGGGTCGATTATCGGGTTGTTTCACATTTGGGCGAGATCCGGAACATCGAGCAGTTACGGTTACGGTTTCAGTTTTTTTCAAGCGCGTTACAGTTTAATTTAATTCCGGAAGATTTATCCGTGACGGCTAAAGATTCTCTCGTCCAAAAACTCCGGAACGCGATCCGTCGGGTCAAACTCCGGTACGGGCTCGGTCAACCGTTCAAGAAACTCGAGTCGAGTCAAGTTGATGC...

Protein

Download Protein FASTA

1010 aa · TkA07G041310|TK1151|PROTEIN

MVHGYIRFSRVDYRVVSHLGEIRNIEQLRLRFQFFSSALQFNLIPEDLSVTAKDSLVQKLRNAIRRVKLRYGLGQPFKKLESSQVDARRFALLWNEIIFTMREEDLVSDKEVELMELPPTCWGIMVVRWPCVLLGNELSLAVNQASELSGAPDRWVWFRICNSEYRRCAVIEAYCSVRFLLLDIIDQRSEEFTIVSKLLQEIDHYVAIGEFMKFYKSKTLPKIHADLINLVETLMSPVQNTSKLVYILQSLYEIMVKELP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G041310`
TK1151 ID	TkA07G041310
OH-1004 ID	LXL04_027246
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 98.218 / OH-1004 56.045 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G041310

Location Chr07:11063897-11070345 (+)

Description Similar to CALS11: Callose synthase 11

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g04970`	Required the formation of the callose wall separating the tetraspores (interstitial wall), but not for the callose wall surrounding the pollen mother cells (peripheral wall).	Two callose synthases, GSL1 and GSL5, play an essential and redundant role in plant and pollen development and in fertility.2005 · DOI: 10.1007/s11103-005-4526-7
`At4g03550`	Involved in sporophytic and gametophytic development.	An Arabidopsis callose synthase.2002 · DOI: 10.1023/a:1015558231400 An Arabidopsis Callose Synthase, GSL5, Is Required for Wound and Papillary Callose Formation.2003 · DOI: 10.1105/tpc.016097 Two callose synthases, GSL1 and GSL5, play an essential and redundant role in plant and pollen development and in fertility.2005 · DOI: 10.1007/s11103-005-4526-7
`At2g13680`	Required for the formation of the callose wall separating the tetraspores (interstitial wall) and surrounding the pollen mother cells (peripheral wall).	Callose synthase (CalS5) is required for exine formation during microgametogenesis and for pollen viability in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02379.x Callose (beta-1,3 glucan) is essential for Arabidopsis pollen wall patterning, but not tube growth.2005 · DOI: 10.1186/1471-2229-5-22
`At2g36850`	Involved in sporophytic and gametophytic development.	Dual function of Arabidopsis glucan synthase-like genes GSL8 and GSL10 in male gametophyte development and plant growth.2008 · DOI: 10.1111/j.1365-313x.2008.03462.x Dysregulation of cell-to-cell connectivity and stomatal patterning by loss-of-function mutation in Arabidopsis chorus (glucan synthase-like 8).2010 · DOI: 10.1242/dev.049197
`At5g13000`	Involved in callose synthesis at the forming cell plate during cytokinesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027246 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002758 innate immune response-activating signaling pathway Biological Process

GO:0006075 (1->3)-beta-D-glucan biosynthetic process Biological Process

GO:0006952 defense response Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0009555 pollen development Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0009620 response to fungus Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0009863 salicylic acid mediated signaling pathway Biological Process

GO:0009965 leaf morphogenesis Biological Process

KEGG gene cross-reference

ath:AT2G13680

ath:AT2G31960

ath:AT4G03550

ath:AT4G04970

ath:AT5G13000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.562

Rank 1 · TkA07G041310 · TK1151

Endoplasmic reticulum0.217

Rank 2 · TkA07G041310 · TK1151

Golgi apparatus0.151

Rank 3 · TkA07G041310 · TK1151

Cytoplasm0.134

Rank 4 · TkA07G041310 · TK1151

Lysosome / Vacuole0.081

Rank 5 · TkA07G041310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25968CALS1131-312 aa

PF02364Glucan_synthase322-1009 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G041310	`PF25968`	CALS1	131	312	6.1e-19	69.2
TkA07G041310	`PF02364`	Glucan_synthase	322	1009	5.5e-257	855.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S9U0`	Arabidopsis thaliana	sp\|Q9S9U0\|CALSB_ARATH Callose synthase 11	68.100%	Swiss-Prot	High
`Q9ZT82`	Arabidopsis thaliana	sp\|Q9ZT82\|CALSC_ARATH Callose synthase 12	67.100%	Swiss-Prot	High
`Q3B724`	Arabidopsis thaliana	sp\|Q3B724\|CALS5_ARATH Callose synthase 5	50.400%	Swiss-Prot	High
`Q9SJM0`	Arabidopsis thaliana	sp\|Q9SJM0\|CALSA_ARATH Callose synthase 10	51.200%	Swiss-Prot	High
`Q9LXT9`	Arabidopsis thaliana	sp\|Q9LXT9\|CALS3_ARATH Callose synthase 3	48.700%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card