TkA07G031070 | RubberDandelionOmics

Gene overview

TkA07G031070

Reference: TK1151 Chr: Chr07 Coordinates: 8285702-8287618 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

974 bp · TkA07G031070|TK1151|cDNA

AAAGGATAAAACGTCATTTTACCATAAAAAAATATCTCAATCAGAACCTCAAATCCATTGATAGATCAACAAATAAAAAATATATTTCTTGAATGGATAGGGTTTTTGTGATTTCTTCTAAAATTCCAAAACTCCAATCATTTTGCAAGTGCTTCCAAACCCACCACCACCCCAATTCCCATTTTCTTGCTCTATAATTCATGAAACCAACCTTTCCCTCTTCATTCTTCCTTTGAGCTCGTGATTCAATTGCTTACAAT...

CDS

Download CDS FASTA

420 bp · TkA07G031070|TK1151|CDS

ATGGAGTTTTCTGCATATGCCCCTTCTTGGCACTCTTTTTTTACCGCCCCTCTCCTCTTTCCATATCCATTTAATTACATCCCTGAAAACTACGTTCATTGGACCGAAACTCCTGAATCCCACATTTACTCCGCAGATATCCCAGGGGTTAAGAAGGAGGAAATTTGTGTGGAAGTTGAGGATTCCAGGTACCTTATAATTCGTACCGAATCTGCTGACGATACTGTGGTGACACCTGGTGGTCGTACTTTTATGAAAAA...

Protein

Download Protein FASTA

139 aa · TkA07G031070|TK1151|PROTEIN

MEFSAYAPSWHSFFTAPLLFPYPFNYIPENYVHWTETPESHIYSADIPGVKKEEICVEVEDSRYLIIRTESADDTVVTPGGRTFMKKFRLPDTIDVNGISACYENGVLTVTVPRSFVRRGFYIEPADLPQHTEVLARAA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G031070`
TK1151 ID	TkA07G031070
OH-1004 ID	LXL04_027087
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G031070

Location Chr07:8285702-8287618 (+)

Description Similar to HSP15.4: 15.4 kDa class V heat shock protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21870`	15.4 kDa class V heat shock protein.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0517100`	18.8 kDa class V heat shock protein.	No verified direct reference in this release
`Os01g0136000`	16.9 kDa class I heat shock protein 3.	No verified direct reference in this release
`Os01g0136100`	16.9 kDa class I heat shock protein 1.	No verified direct reference in this release
`Os01g0136200`	16.9 kDa class I heat shock protein 2.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027087 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0009408 response to heat Biological Process

GO:0009651 response to salt stress Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0051259 protein complex oligomerization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0051082 unfolded protein binding Molecular Function

KEGG gene cross-reference

ath:AT4G21870

dosa:Os07g0517100

gmx:100526870

gmx:100791172

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.622

Rank 1 · TkA07G031070 · TK1151

Nucleus0.414

Rank 2 · TkA07G031070 · TK1151

Endoplasmic reticulum0.072

Rank 3 · TkA07G031070 · TK1151

Cell membrane0.070

Rank 4 · TkA07G031070 · TK1151

Mitochondrion0.054

Rank 5 · TkA07G031070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00011HSP2034-115 aa

PF27746Small_heat_shock_put34-113 aa

PF17886ArsA_HSP2043-111 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G031070	`PF00011`	HSP20	34	115	2.4e-15	57.2
TkA07G031070	`PF27746`	Small_heat_shock_put	34	113	0.0047	16.9
TkA07G031070	`PF17886`	ArsA_HSP20	43	111	0.00079	19.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49710`	Arabidopsis thaliana	sp\|O49710\|HS154_ARATH 15.4 kDa class V heat shock protein	53.200%	Swiss-Prot	High
`Q7EZ57`	Oryza sativa subsp. japonica	sp\|Q7EZ57\|HS188_ORYSJ 18.8 kDa class V heat shock protein	52.700%	Swiss-Prot	Medium
`Q943E7`	Oryza sativa subsp. japonica	sp\|Q943E7\|HS16C_ORYSJ 16.9 kDa class I heat shock protein 3	46.900%	Swiss-Prot	Medium
`P27777`	Oryza sativa subsp. japonica	sp\|P27777\|HS16A_ORYSJ 16.9 kDa class I heat shock protein 1	45.800%	Swiss-Prot	Medium
`Q943E6`	Oryza sativa subsp. japonica	sp\|Q943E6\|HS16B_ORYSJ 16.9 kDa class I heat shock protein 2	45.800%	Swiss-Prot	Medium

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