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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G421770
Reference: TK1151 Chr: Chr06 Coordinates: 104364339-104364737 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

399 bp · TkA06G421770|TK1151|cDNA

ATGAACATCCATAGAAAAGACAAAGTCAAAGCTAAACACCAAAAGAATTTTACTACCACTACTACTATTTCAACAAAGACTAACAAAGATGATCAGTTGATAGTTTCTGCTAATTCTTTCAATCTTATTCCTAATGATCAAGAGGCGCAATACCTAAGGTCTTCTCTTGGGTTTCCTACAGGTGATCATGGCTATCAGTTTACAACATCAAACCCTAATTTTCCGTGGAGTTTTGCAGCGTCGGAATTCGATAATCGTGC...

CDS

Download CDS FASTA

399 bp · TkA06G421770|TK1151|CDS

ATGAACATCCATAGAAAAGACAAAGTCAAAGCTAAACACCAAAAGAATTTTACTACCACTACTACTATTTCAACAAAGACTAACAAAGATGATCAGTTGATAGTTTCTGCTAATTCTTTCAATCTTATTCCTAATGATCAAGAGGCGCAATACCTAAGGTCTTCTCTTGGGTTTCCTACAGGTGATCATGGCTATCAGTTTACAACATCAAACCCTAATTTTCCGTGGAGTTTTGCAGCGTCGGAATTCGATAATCGTGC...

Protein

Download Protein FASTA

132 aa · TkA06G421770|TK1151|PROTEIN

MNIHRKDKVKAKHQKNFTTTTTISTKTNKDDQLIVSANSFNLIPNDQEAQYLRSSLGFPTGDHGYQFTTSNPNFPWSFAASEFDNRALHEERLRVDLNLGIGTSEMDATRKLGEEDWFDKEIDLELRLGHYP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G421770
TK1151 IDTkA06G421770
OH-1004 IDLXL04_022970
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 78.107
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G421770
LocationChr06:104364339-104364737 (-)
DescriptionSimilar to TAC1: Transcriptional regulator TAC1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022970 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0008361 regulation of cell size Biological Process
GO:0009409 response to cold Biological Process
GO:0009755 hormone-mediated signaling pathway Biological Process
GO:0009908 flower development Biological Process
GO:0010093 specification of floral organ identity Biological Process
GO:0030154 cell differentiation Biological Process
GO:0042127 regulation of cell population proliferation Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0048441 petal development Biological Process
GO:0090691 formation of plant organ boundary Biological Process
KEGG gene cross-reference
ath:AT2G37740
ath:AT2G42410
ath:AT3G09290
ath:AT3G23130
ath:AT5G06070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.971
Rank 1 · TkA06G421770 · TK1151
Cytoplasm0.083
Rank 2 · TkA06G421770 · TK1151
Cell membrane0.029
Rank 3 · TkA06G421770 · TK1151
Endoplasmic reticulum0.023
Rank 4 · TkA06G421770 · TK1151
Plastid0.016
Rank 5 · TkA06G421770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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