TkA06G360100 | RubberDandelionOmics

Gene overview

TkA06G360100

Reference: TK1151 Chr: Chr06 Coordinates: 89281402-89284122 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1839 bp · TkA06G360100|TK1151|cDNA

ATGCTATCCATCCTTATCACACGGCAAGGAGGTCCTACCTCCTCAGCGGCAATTTACACGGAAGTGCTCCAGCCCCGAGAGCTTTCAAGACTTGGTCTAACTGAATGGGAGCAAATCCTAGCCATAGTCTCCAAGCAGCGGAGCAAGGCTGCCGCTGAAGTGAAAGTGGCTATTGAGAAGTTAATTGAAAAGGTCCGAGGACTTGGTCTGATCCCTCCTGAAGACAAGTCTAAACGCAAGCGATCAGCGACTGCCGGTTC...

CDS

Download CDS FASTA

1839 bp · TkA06G360100|TK1151|CDS

ATGCTATCCATCCTTATCACACGGCAAGGAGGTCCTACCTCCTCAGCGGCAATTTACACGGAAGTGCTCCAGCCCCGAGAGCTTTCAAGACTTGGTCTAACTGAATGGGAGCAAATCCTAGCCATAGTCTCCAAGCAGCGGAGCAAGGCTGCCGCTGAAGTGAAAGTGGCTATTGAGAAGTTAATTGAAAAGGTCCGAGGACTTGGTCTGATCCCTCCTGAAGACAAGTCTAAACGCAAGCGATCAGCGACTGCCGGTTC...

Protein

Download Protein FASTA

612 aa · TkA06G360100|TK1151|PROTEIN

MLSILITRQGGPTSSAAIYTEVLQPRELSRLGLTEWEQILAIVSKQRSKAAAEVKVAIEKLIEKVRGLGLIPPEDKSKRKRSATAGSSSRQRGPDVSQYCQLLLPYGTKVINNTLPAGVEPVQHKFIPFPERGIFYFDGQNMCFQREDDLSKAPTEHLSNLRHCCKHYPALEKGFHFLISNELINRREELRIGEYAFIKPEIEFEVEPLNLLSLKRSAFGLSAYGLSGLDPCSYNFGNSWDTHLPLIEFSYNNRYHTTIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G360100`
TK1151 ID	TkA06G360100
OH-1004 ID	LXL04_021080
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.700
Protein coverage (%)	TK1151 41.830 / OH-1004 47.584 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G360100`
Location	Chr06:89281402-89284122 (-)
Description	Similar to TY3B-I: Transposon Ty3-I Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_021080` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function
KEGG gene cross-reference	sce:YGR109W-B sce:YIL082W-A spo:2540036 spo:2542763 spo:2542903 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.513

Rank 1 · TkA06G360100 · TK1151

Cytoplasm0.386

Rank 2 · TkA06G360100 · TK1151

Mitochondrion0.121

Rank 3 · TkA06G360100 · TK1151

Cell membrane0.043

Rank 4 · TkA06G360100 · TK1151

Endoplasmic reticulum0.033

Rank 5 · TkA06G360100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24719Imm33-like137-182 aa

PF31073DUF8803336-403 aa

PF24626SH3_Tf2-1339-403 aa

PF22938Integrase_p58_C367-402 aa

PF24719Imm33-like440-461 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G360100	`PF24719`	Imm33-like	137	182	0.056	14.0
TkA06G360100	`PF31073`	DUF8803	336	403	4.1e-08	33.7
TkA06G360100	`PF24626`	SH3_Tf2-1	339	403	3.7e-28	98.1
TkA06G360100	`PF22938`	Integrase_p58_C	367	402	0.011	16.5
TkA06G360100	`PF24719`	Imm33-like	440	461	0.056	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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