TkA06G180810 | RubberDandelionOmics

Gene overview

TkA06G180810

Reference: TK1151 Chr: Chr06 Coordinates: 47259148-47260193 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · TkA06G180810|TK1151|cDNA

ATGACGTTTAGTGTGCTTTACTGTTTGTTTTATATTCAGGTCATCTATGATCTTCTTGAAAGATCATCTGGCCATTTGGAACTCAGAGAGGATCCAGAACAGGGGCCACTTATAGCAGGTCTTAGATGCATCAAGGTCAACTCAGCTGGTAGGATTCTTCAAACATCTTCACTTCTGAAATACCGTAGTCAAGTTATTGGTGGTAAACTTGCATTTGTTGATCTTGCAGGAAGTTATCAGCGTATTATTTCATGTTTTTC...

CDS

Download CDS FASTA

525 bp · TkA06G180810|TK1151|CDS

ATGACGTTTAGTGTGCTTTACTGTTTGTTTTATATTCAGGTCATCTATGATCTTCTTGAAAGATCATCTGGCCATTTGGAACTCAGAGAGGATCCAGAACAGGGGCCACTTATAGCAGGTCTTAGATGCATCAAGGTCAACTCAGCTGGTAGGATTCTTCAAACATCTTCACTTCTGAAATACCGTAGTCAAGTTATTGGTGGTAAACTTGCATTTGTTGATCTTGCAGGAAGTTATCAGCGTATTATTTCATGTTTTTC...

Protein

Download Protein FASTA

174 aa · TkA06G180810|TK1151|PROTEIN

MTFSVLYCLFYIQVIYDLLERSSGHLELREDPEQGPLIAGLRCIKVNSAGRILQTSSLLKYRSQVIGGKLAFVDLAGSYQRIISCFSLQQIRRELGLSSIEVIDHMIIINSFAQGHVLDLFASALDQVGVAEMKVVIERTGGLVVLAESFGRSVFKDSCRRVFEKGEESLCSFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G180810`
TK1151 ID	TkA06G180810
OH-1004 ID	LXL04_034014
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	93.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G180810

Location Chr06:47259148-47260193 (+)

Description Similar to KIN8B: Kinesin-like protein KIN-8B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05520`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER) (By similarity).	No verified direct reference in this release
`At3g23660`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER).	No verified direct reference in this release
`At4g14160`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER).	No verified direct reference in this release
`At2g21630`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER) (By similarity).	No verified direct reference in this release
`At3g49650`	Kinesin-like protein KIN-8B.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_034014 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0090110 COPII-coated vesicle cargo loading Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0030127 COPII vesicle coat Cellular Component

GO:0070971 endoplasmic reticulum exit site Cellular Component

KEGG gene cross-reference

ath:AT1G05520

ath:AT2G21630

ath:AT3G23660

ath:AT3G49650

ath:AT4G14160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.470

Rank 1 · TkA06G180810 · TK1151

Nucleus0.377

Rank 2 · TkA06G180810 · TK1151

Endoplasmic reticulum0.099

Rank 3 · TkA06G180810 · TK1151

Mitochondrion0.096

Rank 4 · TkA06G180810 · TK1151

Golgi apparatus0.069

Rank 5 · TkA06G180810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225Kinesin3-54 aa

PF20728Nairovirus_NSm50-105 aa

PF00225Kinesin64-79 aa

PF04811Sec23_trunk112-163 aa

PF20728Nairovirus_NSm132-157 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G180810	`PF00225`	Kinesin	3	54	2.6e-06	27.4
TkA06G180810	`PF20728`	Nairovirus_NSm	50	105	0.26	12.1
TkA06G180810	`PF00225`	Kinesin	64	79	2.6e-06	27.4
TkA06G180810	`PF04811`	Sec23_trunk	112	163	7.5e-11	42.8
TkA06G180810	`PF20728`	Nairovirus_NSm	132	157	0.26	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H0S3`	Arabidopsis thaliana	sp\|Q8H0S3\|SC23B_ARATH Protein transport protein SEC23 B	86.000%	Swiss-Prot	Low
`Q9LUG1`	Arabidopsis thaliana	sp\|Q9LUG1\|SC23E_ARATH Protein transport protein SEC23 E	82.500%	Swiss-Prot	Low
`Q8VXX0`	Arabidopsis thaliana	sp\|Q8VXX0\|SC23F_ARATH Protein transport protein SEC23 F	82.800%	Swiss-Prot	Low
`Q9SIJ7`	Arabidopsis thaliana	sp\|Q9SIJ7\|SC23C_ARATH Protein transport protein SEC23 C	68.400%	Swiss-Prot	Low
`Q9SCJ4`	Arabidopsis thaliana	sp\|Q9SCJ4\|KN8B_ARATH Kinesin-like protein KIN-8B	49.000%	Swiss-Prot	Low

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