TkA06G157770 | RubberDandelionOmics

Gene overview

TkA06G157770

Reference: TK1151 Chr: Chr06 Coordinates: 41623066-41624282 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

847 bp · TkA06G157770|TK1151|cDNA

TGTGGAATGGCCTACGACGCCGACTGCCATTCGATATGAAGCTTCTCCGGGAGCGAAGAAGATTCAAAAAGCAGAGTTACAGTCTCTCACATTGCGATCCGTTTTCTACTTGTATATACTGATCGGAATATAAGTAGGGGAGACAACATGGACGAAGAATTGCCAGGTTCAATTGGTACAAGCGCAAGCTTAGCCCTAAGATTGGGACAGGCGCTCTTCTCTGTTGCTTCTCTCCTTTTCATGTGCGTCGGTGTTCAGTT...

CDS

Download CDS FASTA

477 bp · TkA06G157770|TK1151|CDS

ATGGACGAAGAATTGCCAGGTTCAATTGGTACAAGCGCAAGCTTAGCCCTAAGATTGGGACAGGCGCTCTTCTCTGTTGCTTCTCTCCTTTTCATGTGCGTCGGTGTTCAGTTCTACGCTTATACTTCTTTTTGCTTCTTGGTGACAATCCAAGGACTAATGATTCCATGGAGTTTAACACTAGCAATGGTGGACACATTCTCTGTATTCGTAAAACCTCCATCTCGCCAAGTGCAAATGGTGGCAGTCATAGTCATAGG...

Protein

Download Protein FASTA

158 aa · TkA06G157770|TK1151|PROTEIN

MDEELPGSIGTSASLALRLGQALFSVASLLFMCVGVQFYAYTSFCFLVTIQGLMIPWSLTLAMVDTFSVFVKPPSRQVQMVAVIVIGDWILSFLSLAAACSTASVSDFMVTEAGASFCGGKICSRYQLSAAMACLSWCLSLASGLFNFWLLPSLCSNF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G157770`
TK1151 ID	TkA06G157770
OH-1004 ID	LXL04_024265
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 81.026 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G157770

Location Chr06:41623066-41624282 (+)

Description Similar to ARALYDRAFT_485429: CASP-like protein ARALYDRAFT_485429

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g49405`	CASP-like protein 5C3.	No verified direct reference in this release
`At3g50810`	CASP-like protein 5C2.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0767900`	CASP-like protein 5C1.	No verified direct reference in this release
`UniProt: B8BPI2`	CASP-like protein 5C1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024265 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G50810

ath:AT4G37235

dosa:Os03g0767900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.740

Rank 1 · TkA06G157770 · TK1151

Cytoplasm0.106

Rank 2 · TkA06G157770 · TK1151

Lysosome / Vacuole0.099

Rank 3 · TkA06G157770 · TK1151

Endoplasmic reticulum0.092

Rank 4 · TkA06G157770 · TK1151

Nucleus0.046

Rank 5 · TkA06G157770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04535CASP_dom10-139 aa

PF22812CR_prot_dom_plant12-48 aa

PF22812CR_prot_dom_plant76-103 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G157770	`PF04535`	CASP_dom	10	139	1.5e-21	77.5
TkA06G157770	`PF22812`	CR_prot_dom_plant	12	48	0.74	11.0
TkA06G157770	`PF22812`	CR_prot_dom_plant	76	103	0.74	11.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q3ECT8`	Arabidopsis thaliana	sp\|Q3ECT8\|CSPL4_ARATH CASP-like protein 5C3	54.300%	Swiss-Prot	High
`P0CB17`	Arabidopsis thaliana	sp\|P0CB17\|CSPLH_ARATH CASP-like protein 5C2	50.000%	Swiss-Prot	High
`Q10EJ2`	Oryza sativa subsp. japonica	sp\|Q10EJ2\|CSPLU_ORYSJ CASP-like protein 5C1	57.100%	Swiss-Prot	High
`B8BPI2`	Oryza sativa subsp. indica	sp\|B8BPI2\|CSPLU_ORYSI CASP-like protein 5C1	56.500%	Swiss-Prot	High

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