Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1549 bp · TkA06G075420|TK1151|cDNA
CTTATGATGTCGAATAATAAAAGCTAGTGATTCTTTTTAGATTTGTAGTAACAAAGTAATTTAGGTATTTTTGAAGTAATAAGGCGTAAAAAGGGTGTCGAGAGGAGAATCATACAATGGGAAAAGCCTCTTTCATTCTTTCTTTCACCCATGCCTTCGTTTTTATGGTACCGCTTATTTTAGCTAGGACCATACAAGATGAAGGATCCACATTGGGAGCCAATTCAACAAGGAGGGAGCTTCATGGCGGATGCGAAGCT...
1182 bp · TkA06G075420|TK1151|CDS
ATGGGAAAAGCCTCTTTCATTCTTTCTTTCACCCATGCCTTCGTTTTTATGGTACCGCTTATTTTAGCTAGGACCATACAAGATGAAGGATCCACATTGGGAGCCAATTCAACAAGGAGGGAGCTTCATGGCGGATGCGAAGCTTTTAACAAAATCGACAAATGCTGGAGGTGCAAAGCCGATTGGGCAGAAAACCGTCAAGCATTAGCCGATTGTGCACTTGGATTTGCAAAAGGAACCACCGGCGGCAAGGGCGGCGA...
Protein
Download Protein FASTA393 aa · TkA06G075420|TK1151|PROTEIN
MGKASFILSFTHAFVFMVPLILARTIQDEGSTLGANSTRRELHGGCEAFNKIDKCWRCKADWAENRQALADCALGFAKGTTGGKGGEIYEVTDPSDDDAVNPKPGTLRCGVTQDRPLWIIFKKDMVIKLKHELVITSDKTIDGRGACVQIANGAGLTVMKVKNVIIHGIHIHHIKETPGGIIKDSEKHSGPRAKSDGDGICIFGSCKVWVDHCTFDHGADGLVDVTMGGTDVTISNSIFNDHDKVMLLGVGNELEKNMKV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G075420 |
|---|---|
| TK1151 ID | TkA06G075420 |
| OH-1004 ID | LXL04_025206 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G075420 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:20220586-20222581 (+) | |||||||||
| Description | Similar to Pectate lyase 5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009664 plant-type cell wall organization Biological Process GO:0045490 pectin catabolic process Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0030570 pectate lyase activity Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G14420 ath:AT2G02720 ath:AT3G01270 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00544Pectate_lyase_4127-327 aaPF13229Beta_helix151-271 aaPF25586zf-CCCH_PAN3162-168 aaPF25586zf-CCCH_PAN3200-218 aaPF17161DUF5123209-267 aaPF17161DUF5123292-329 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G075420 | PF00544 | Pectate_lyase_4 | 127 | 327 | 3.4e-22 | 79.7 |
| TkA06G075420 | PF13229 | Beta_helix | 151 | 271 | 2.4e-08 | 34.4 |
| TkA06G075420 | PF25586 | zf-CCCH_PAN3 | 162 | 168 | 2.4 | 8.6 |
| TkA06G075420 | PF25586 | zf-CCCH_PAN3 | 200 | 218 | 2.4 | 8.6 |
| TkA06G075420 | PF17161 | DUF5123 | 209 | 267 | 0.058 | 15.1 |
| TkA06G075420 | PF17161 | DUF5123 | 292 | 329 | 0.058 | 15.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.