TkA06G060590 | RubberDandelionOmics

Gene overview

TkA06G060590

Reference: TK1151 Chr: Chr06 Coordinates: 16363194-16364266 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

809 bp · TkA06G060590|TK1151|cDNA

CTCTCACAAAAACCAAACTTTCGACCTAAAGAACACATCAATGGCCCGTGCAATGATGACGAAGATTTTGATGAGCATCGTTGCTGCAACGATGCTCATTGAATTAGCGCTAGCTGTGGATCACTCCGTCGGAGCGCCAAATGGAGGATGGGACACCTCGACTGACCTCAGTTCGTGGGCTTCATCCCAAACATTTACAGTAGGCGATAACATAGTTTTTACTTATACACCGAACCACGATGTGTTAGAAGTGTCCAAGG...

CDS

Download CDS FASTA

609 bp · TkA06G060590|TK1151|CDS

ATGGCCCGTGCAATGATGACGAAGATTTTGATGAGCATCGTTGCTGCAACGATGCTCATTGAATTAGCGCTAGCTGTGGATCACTCCGTCGGAGCGCCAAATGGAGGATGGGACACCTCGACTGACCTCAGTTCGTGGGCTTCATCCCAAACATTTACAGTAGGCGATAACATAGTTTTTACTTATACACCGAACCACGATGTGTTAGAAGTGTCCAAGGATGACTATGATTCTTGCTCAACAAGCAGTCCAATTTCTAC...

Protein

Download Protein FASTA

202 aa · TkA06G060590|TK1151|PROTEIN

MARAMMTKILMSIVAATMLIELALAVDHSVGAPNGGWDTSTDLSSWASSQTFTVGDNIVFTYTPNHDVLEVSKDDYDSCSTSSPISTSTRSPTTIELSDAVSRYFICGIAGHCDQGMKVEIKTESAASPPPTTTTPTSPTPPESTPSPPSSSSPDTPSPPASTTPGTPTPANPTPSGPSPSSAETLKITVLSMVGLGFLMMM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G060590`
TK1151 ID	TkA06G060590
OH-1004 ID	LXL04_025417
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G060590

Location Chr06:16363194-16364266 (-)

Description Similar to UCC1: Uclacyanin 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32300`	Uclacyanin 1.	No verified direct reference in this release
`At4g31840`	May act as a carbohydrate transporter.	No verified direct reference in this release
`At4g30590`	May act as a carbohydrate transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025417 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0009055 electron transfer activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G25060

ath:AT2G32300

ath:AT3G20570

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.631

Rank 1 · TkA06G060590 · TK1151

Extracellular0.161

Rank 2 · TkA06G060590 · TK1151

Endoplasmic reticulum0.112

Rank 3 · TkA06G060590 · TK1151

Cytoplasm0.052

Rank 4 · TkA06G060590 · TK1151

Plastid0.044

Rank 5 · TkA06G060590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02298Cu_bind_like37-117 aa

PF13352DUF410066-172 aa

PF27998ArabinogalactanP79-93 aa

PF06525SoxE101-130 aa

PF27998ArabinogalactanP125-198 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G060590	`PF02298`	Cu_bind_like	37	117	1e-24	87.0
TkA06G060590	`PF13352`	DUF4100	66	172	0.46	11.2
TkA06G060590	`PF27998`	ArabinogalactanP	79	93	4.7	8.2
TkA06G060590	`PF06525`	SoxE	101	130	0.057	13.6
TkA06G060590	`PF27998`	ArabinogalactanP	125	198	4.7	8.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O82081`	Arabidopsis thaliana	sp\|O82081\|UCC1_ARATH Uclacyanin 1	45.200%	Swiss-Prot	Medium
`Q9SZ51`	Arabidopsis thaliana	sp\|Q9SZ51\|ENL15_ARATH Early nodulin-like protein 15	35.900%	Swiss-Prot	Medium
`Q9M0A1`	Arabidopsis thaliana	sp\|Q9M0A1\|ENL12_ARATH Early nodulin-like protein 12	35.100%	Swiss-Prot	Low

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