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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G039210
Reference: TK1151 Chr: Chr06 Coordinates: 10555425-10558873 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2442 bp · TkA06G039210|TK1151|cDNA

TTTACATCATTACATGACAAGTATAAGAGTGTGTTGTAACTTGTAATTAAGAAAGTTGAGAAATATATTAGAGAAAGGGGAAGGAATTGGCATAAAAAAATATCTGGTGATGCAATGCGAACACGTCTTAATGCACGTGTACCAAATCGAAAGGGCATTTTTGTCATATGCTCATACCCTCACACCCTTCCCAAACAACTCTTCCAACCCCCGTTTCACAGACATCTTTTTCCACGATTCTAGAGAGAGAAGTGCGTGTA...

CDS

Download CDS FASTA

1323 bp · TkA06G039210|TK1151|CDS

ATGGAGATGTCACAGTCCGATCCGGTTACTGAATGGAGCACATCCGGTGGCCAAACAGGGCTCGAAGAGCCTATGTGGCAATTAGGGTTGGGAGGTGGGTTGGATTCATACCCTCAACGGCCGGATGAAGCCGATTGTATCTATTATTTGAGGACAGGGTTTTGTGGGTACGGTTCTCGCTGTCGGTTCAACCATCCTCGTGATCGTAGTTCGGTGGTCGGAGCTATGAGGTCCACCGGAGGAGAATACCCAGAACGGAT...

Protein

Download Protein FASTA

440 aa · TkA06G039210|TK1151|PROTEIN

MEMSQSDPVTEWSTSGGQTGLEEPMWQLGLGGGLDSYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRSSVVGAMRSTGGEYPERIGQPVCQYYMRTGMCKFGASCKYHHPRHGIGSSNQVSLNMSGYPLRPGEKECSYYVKTGQCKFGVTCKFHHPQPVGITPPPPPPPPPDQSSMASVMQSPVASSQQYGVYSGNWQLPVARPPPPPLLPGSYLAGTYGPPMILAPGMVPFPGWNPYHESVNQNTNVGAGSIYTMAP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G039210
TK1151 IDTkA06G039210
OH-1004 IDLXL04_025985
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G039210
LocationChr06:10555425-10558873 (-)
DescriptionSimilar to At2g47850: Zinc finger CCCH domain-containing protein 32
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g06410 Zinc finger CCCH domain-containing protein 34. No verified direct reference in this release
At2g47850 Zinc finger CCCH domain-containing protein 32. No verified direct reference in this release
At5g18550 Zinc finger CCCH domain-containing protein 58. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0257400 Zinc finger CCCH domain-containing protein 5. No verified direct reference in this release
Os01g0258700 Zinc finger CCCH domain-containing protein 6. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025985 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G47850
ath:AT3G06410
ath:AT5G18550
dosa:Os01g0257400
dosa:Os01g0258700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.847
Rank 1 · TkA06G039210 · TK1151
Cytoplasm0.209
Rank 2 · TkA06G039210 · TK1151
Cell membrane0.034
Rank 3 · TkA06G039210 · TK1151
Endoplasmic reticulum0.022
Rank 4 · TkA06G039210 · TK1151
Golgi apparatus0.014
Rank 5 · TkA06G039210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00642zf-CCCH42-67 aa
PF16131Torus42-65 aa
PF25585zf-CCCH_DUS3L44-65 aa
PF14608zf-CCCH_245-66 aa
PF29102Su_sable_N45-67 aa
PF18345zf_CCCH_446-65 aa
PF18044zf-CCCH_448-66 aa
PF30063Metallothionein55-61 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G039210PF00642zf-CCCH42674.6e-47157.8
TkA06G039210PF16131Torus42651.4e-0629.5
TkA06G039210PF25585zf-CCCH_DUS3L44654.3e-1246.5
TkA06G039210PF14608zf-CCCH_245666.2e-1968.4
TkA06G039210PF29102Su_sable_N45673.48.8
TkA06G039210PF18345zf_CCCH_446654.3e-2071.8
TkA06G039210PF18044zf-CCCH_448662.2e-1763.1
TkA06G039210PF30063Metallothionein55610.4411.6
TkA06G039210PF16131Torus881111.4e-0629.5
TkA06G039210PF00642zf-CCCH891134.6e-47157.8
TkA06G039210PF30063Metallothionein891090.4411.6
TkA06G039210PF18044zf-CCCH_4901122.2e-1763.1
TkA06G039210PF18345zf_CCCH_4921114.3e-2071.8
TkA06G039210PF14608zf-CCCH_2921126.2e-1968.4
TkA06G039210PF29102Su_sable_N921123.48.8
TkA06G039210PF20992CBP66_2nd951110.003817.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SQU4Arabidopsis thalianasp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 3456.400%Swiss-ProtHigh
Q84W91Arabidopsis thalianasp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 3258.700%Swiss-ProtHigh
Q6NPN3Arabidopsis thalianasp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 5857.700%Swiss-ProtHigh
Q5NAV3Oryza sativa subsp. japonicasp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 557.500%Swiss-ProtHigh
Q5NAW2Oryza sativa subsp. japonicasp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 654.200%Swiss-ProtHigh

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