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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G010730
Reference: TK1151 Chr: Chr06 Coordinates: 2767964-2776650 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6004 bp · TkA06G010730|TK1151|cDNA

GTAAATTGTTTCAACTTCAGGTCTTGAAGTAACAAAGTCTTCGTTTACCGCAAACCTAAAACCAACGAGCAAACTGCCGATCACGAGAGAAAGAAAACGAAGCGAAAACCACACAACACTCTTCGACCCGCACCTTTTTCTTTGTCTTCAGCCATCTTCTCACTCTAAAGTTGCTCAATTTGAAGCATGCACAGAGGCATAAACTGACTTCGGCATTGAACAAAGAAAAGAATCTTATGGTTTGAAGATTGATTAAATGG...

CDS

Download CDS FASTA

5508 bp · TkA06G010730|TK1151|CDS

ATGGGTAAAAGTAGACCTAGGGCTGCAGAAAAGAGGGTTTTAGGGCAAGGGTCAATTGTGTTAACATCAGCCTCATCGTTAGCTATACCACCTGCACCTGTTTACACTCCTACCGAAGAGGAGTTTAAGGACCCATTAGCATATATTTATAAAATCAGACCAGAAGCTGAGTCATATGGGATCTGTAAAATAATTCCTCCAAAGAATTGGAAACCCCCTTTTGCCCTAGATTTGAATACGTTTACATTTCCCACAAAAAC...

Protein

Download Protein FASTA

1835 aa · TkA06G010730|TK1151|PROTEIN

MGKSRPRAAEKRVLGQGSIVLTSASSLAIPPAPVYTPTEEEFKDPLAYIYKIRPEAESYGICKIIPPKNWKPPFALDLNTFTFPTKTQAIHQLQARPPACNSKTFELEYNRFLEDQCGKKAVKKKVVFEGKELDLCKLFNGVKRFGGYDNVVKEKKWGEVFRFVRSGGKISACSKYVLCQLYKEHLYDYENYYSKLDQVKEKSSKRGLQSDKKTGNQSSKRSRINEAGENIKKVKEEEYDQICEQCRSGLHAEVMLLCDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G010730
TK1151 IDTkA06G010730
OH-1004 IDLXL04_026451
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G010730
LocationChr06:2767964-2776650 (+)
DescriptionSimilar to Kdm5a: Lysine-specific demethylase 5A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g63490 Functions as a histone H3 'Lys-4' (H3K4me) demethylase involved in the regulation of gene expression.
Arabidopsis histone H3K4 demethylase JMJ17 functions in dehydration stress response.2019 · DOI: 10.1111/nph.15874

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026451 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0008340 determination of adult lifespan Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0032922 circadian regulation of gene expression Biological Process
GO:0045814 negative regulation of gene expression, epigenetic Biological Process
KEGG gene cross-reference
ath:AT1G63490
cel:CELE_ZK593.4
hsa:5927
mmu:214899
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.858
Rank 1 · TkA06G010730 · TK1151
Cytoplasm0.183
Rank 2 · TkA06G010730 · TK1151
Cell membrane0.033
Rank 3 · TkA06G010730 · TK1151
Mitochondrion0.020
Rank 4 · TkA06G010730 · TK1151
Endoplasmic reticulum0.017
Rank 5 · TkA06G010730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02375JmjN33-66 aa
PF01388ARID103-190 aa
PF13771zf-HC5HC2H221-270 aa
PF13832zf-HC5HC2H_2229-270 aa
PF23011PHD-1st_NSD240-287 aa
PF00628PHD243-287 aa
PF23004PHDvar_NSD243-277 aa
PF30811PHD_UBR7-like252-290 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G010730PF02375JmjN33667.7e-1761.5
TkA06G010730PF01388ARID1031901e-1249.0
TkA06G010730PF13771zf-HC5HC2H2212700.3911.6
TkA06G010730PF13832zf-HC5HC2H_22292702.09.4
TkA06G010730PF23011PHD-1st_NSD2402870.009216.8
TkA06G010730PF00628PHD2432871.5e-1660.9
TkA06G010730PF23004PHDvar_NSD2432776.37.6
TkA06G010730PF30811PHD_UBR7-like2522900.001319.4
TkA06G010730PF13467RHH_43283390.1313.0
TkA06G010730PF02373JmjC4135292.6e-43147.8
TkA06G010730PF21323KDM5_C-hel5335660.0009319.7
TkA06G010730PF13832zf-HC5HC2H_26016562.09.4
TkA06G010730PF30811PHD_UBR7-like6176420.001319.4
TkA06G010730PF02928zf-C5HC26226741.3e-1661.3
TkA06G010730PF08429PLU-175710333.9e-37128.9
TkA06G010730PF08429PLU-189312023.9e-37128.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I240Arabidopsis thalianasp|F4I240|JMJ17_ARATH Lysine-specific demethylase JMJ1738.700%Swiss-ProtMedium

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