TkA06G000620 | RubberDandelionOmics

Gene overview

TkA06G000620

Reference: TK1151 Chr: Chr06 Coordinates: 105115-105818 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

576 bp · TkA06G000620|TK1151|cDNA

ATGGATTCAGTTTCGAATGTGACGTGGCGAAGTAGGATTAGAGAAGGGAAAACATATGATGTGTTGATTAGGTATGATTCTAGTTTGCATAATCTTAGTGTTGTGTTTACTGGTTTTCTGCGAAGTGGTGGCCGTCAACTTCAACGGATTTCTTACATTGTTGATCTGAGAGATCATTTGCCGGAGTGGGTTGAATTTGGATTCTCTGGTGCAACTGAAAATGCTTCTGTTATACATAGTATATTCACATGGGAGTTCAG...

CDS

Download CDS FASTA

576 bp · TkA06G000620|TK1151|CDS

ATGGATTCAGTTTCGAATGTGACGTGGCGAAGTAGGATTAGAGAAGGGAAAACATATGATGTGTTGATTAGGTATGATTCTAGTTTGCATAATCTTAGTGTTGTGTTTACTGGTTTTCTGCGAAGTGGTGGCCGTCAACTTCAACGGATTTCTTACATTGTTGATCTGAGAGATCATTTGCCGGAGTGGGTTGAATTTGGATTCTCTGGTGCAACTGAAAATGCTTCTGTTATACATAGTATATTCACATGGGAGTTCAG...

Protein

Download Protein FASTA

191 aa · TkA06G000620|TK1151|PROTEIN

MDSVSNVTWRSRIREGKTYDVLIRYDSSLHNLSVVFTGFLRSGGRQLQRISYIVDLRDHLPEWVEFGFSGATENASVIHSIFTWEFSSSLGIGEDTMDPDLAIMVLGTLKYLKPKTTCSSWIPNSKRVPEQKSFRTESARATNNFSEQEKLGEGGFGGVYRGFIKEIDSYIAVKKVSSSSNQGVKEYASEV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G000620`
TK1151 ID	TkA06G000620
OH-1004 ID	LXL04_017281
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	67.900
Protein coverage (%)	TK1151 100.000 / OH-1004 30.311 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G000620

Location Chr06:105115-105818 (-)

Description Similar to LECRK91: L-type lectin-domain containing receptor kinase IX.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10530`	Promotes hydrogen peroxide H(2)O(2) production and cell death.	No verified direct reference in this release
`At5g65600`	Promotes hydrogen peroxide H(2)O(2) production and cell death.	No verified direct reference in this release
`At3g55550`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae.	No verified direct reference in this release
`At5g06740`	Probable L-type lectin-domain containing receptor kinase S.5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017281 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0009555 pollen development Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G53380

ath:AT3G53810

ath:AT5G10530

ath:AT5G55830

ath:AT5G65600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.279

Rank 1 · TkA06G000620 · TK1151

Endoplasmic reticulum0.212

Rank 2 · TkA06G000620 · TK1151

Lysosome / Vacuole0.149

Rank 3 · TkA06G000620 · TK1151

Cytoplasm0.137

Rank 4 · TkA06G000620 · TK1151

Extracellular0.127

Rank 5 · TkA06G000620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00139Lectin_legB2-95 aa

PF27199YonV_C9-23 aa

PF27199YonV_C131-150 aa

PF00069Pkinase145-186 aa

PF07714PK_Tyr_Ser-Thr148-186 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G000620	`PF00139`	Lectin_legB	2	95	4.5e-17	63.1
TkA06G000620	`PF27199`	YonV_C	9	23	0.24	12.1
TkA06G000620	`PF27199`	YonV_C	131	150	0.24	12.1
TkA06G000620	`PF00069`	Pkinase	145	186	0.00048	20.3
TkA06G000620	`PF07714`	PK_Tyr_Ser-Thr	148	186	0.021	14.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LXA5`	Arabidopsis thaliana	sp\|Q9LXA5\|LRK91_ARATH L-type lectin-domain containing receptor kinase IX.1	33.600%	Swiss-Prot	Medium
`Q9LSL5`	Arabidopsis thaliana	sp\|Q9LSL5\|LRK92_ARATH L-type lectin-domain containing receptor kinase IX.2	34.400%	Swiss-Prot	Medium
`Q9M2S4`	Arabidopsis thaliana	sp\|Q9M2S4\|LRKS4_ARATH L-type lectin-domain containing receptor kinase S.4	30.300%	Swiss-Prot	Medium
`Q9FG33`	Arabidopsis thaliana	sp\|Q9FG33\|LRKS5_ARATH Probable L-type lectin-domain containing receptor kinase S.5	31.100%	Swiss-Prot	Medium

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