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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G252240
Reference: TK1151 Chr: Chr05 Coordinates: 62731967-62741557 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3141 bp · TkA05G252240|TK1151|cDNA

ACCTAGTTTTTGTGTTCGATTATGGAGTTGGCTGCAGGCGATTTTCAAACAGATATAGCTGCCGCGCCACCACCGCCCGAACGGACTCCGCCGGTGGACGAGGATGACGAAGACGAGGAATATGAAGAGGAAGAAGAGGAGGAGGAGGATGATGACGACGAAGAAACAAATAACGAAGACGAAACTCTGATAGCGAAAGCTCAGGGACTGATTGACAAGATCGCCGCCTCCCCTGAAAACGTTAAGCCTCCCTGTCTTCA...

CDS

Download CDS FASTA

4599 bp · TkA05G252240|TK1151|CDS

ATGGAGTTGGCTGCAGGCGATTTTCAAACAGATATAGCTGCCGCGCCACCACCGCCCGAACGGACTCCGCCGGTGGACGAGGATGACGAAGACGAGGAATATGAAGAGGAAGAAGAGGAGGAGGAGGATGATGACGACGAAGAAACAAATAACGAAGACGAAACTCTGATAGCGAAAGCTCAGGGACTGATTGACAAGATCGCCGCCTCCCCTGAAAACGTTAAGCCTCCCTGTCTTCATGCCTTAGCTTCCATTCTCGA...

Protein

Download Protein FASTA

1532 aa · TkA05G252240|TK1151|PROTEIN

MELAAGDFQTDIAAAPPPPERTPPVDEDDEDEEYEEEEEEEEDDDDEETNNEDETLIAKAQGLIDKIAASPENVKPPCLHALASILETQEARYREETGHSSLSNGRASYNIGRLGNLIRDNDEFFELISAKFLSETRYPISVQAASLRLVYSCSLTWVYPHVFEEPVLENIKGWVMDGSTKFFAEDCKGKNGQASDSEMLKTYSTGLVAACLAGGGQLVEDVLTSGLSAKLMRYLRICVLGEASTSQKESNFLLDKKNST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G252240
TK1151 IDTkA05G252240
OH-1004 IDLXL04_020596
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.700
Protein coverage (%)TK1151 99.282 / OH-1004 88.902
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G252240
LocationChr05:62731967-62741557 (+)
DescriptionSimilar to DCAF1: DDB1- and CUL4-associated factor homolog 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g31160 Component of the CUL4-RBX1-DDB1-DCAF1 E3 ubiquitin-protein ligase complex, DCAF1 may function as the substrate recognition module within this complex.
Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.2008 · DOI: 10.1105/tpc.108.058891

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020596 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009908 flower development Biological Process
GO:0010154 fruit development Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0035212 cell competition in a multicellular organism Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0043687 post-translational protein modification Biological Process
GO:0045732 positive regulation of protein catabolic process Biological Process
GO:0048366 leaf development Biological Process
GO:0048367 shoot system development Biological Process
KEGG gene cross-reference
ath:AT4G31160
cel:CELE_ZK1251.9
hsa:9730
mmu:321006
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.636
Rank 1 · TkA05G252240 · TK1151
Cytoplasm0.312
Rank 2 · TkA05G252240 · TK1151
Cell membrane0.061
Rank 3 · TkA05G252240 · TK1151
Golgi apparatus0.042
Rank 4 · TkA05G252240 · TK1151
Endoplasmic reticulum0.037
Rank 5 · TkA05G252240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04281Tom2225-69 aa
PF04931DNA_pol_phi27-68 aa
PF27635Mahjong_helical197-212 aa
PF27635Mahjong_helical469-616 aa
PF27600DCAF1_helical529-617 aa
PF24768ARM_ARMC5558-593 aa
PF23410Beta-prop_VPS8570-601 aa
PF00514Arm620-643 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G252240PF04281Tom2225690.212.2
TkA05G252240PF04931DNA_pol_phi27683.16.6
TkA05G252240PF27635Mahjong_helical1972122.1e-1971.1
TkA05G252240PF27635Mahjong_helical4696162.1e-1971.1
TkA05G252240PF27600DCAF1_helical5296179e-47160.0
TkA05G252240PF24768ARM_ARMC55585930.1911.8
TkA05G252240PF23410Beta-prop_VPS85706010.0007619.3
TkA05G252240PF00514Arm6206433.18.7
TkA05G252240PF27600DCAF1_helical7088919e-47160.0
TkA05G252240PF00514Arm8558703.18.7
TkA05G252240PF24768ARM_ARMC593110030.1911.8
TkA05G252240PF00514Arm9339503.18.7
TkA05G252240PF27600DCAF1_helical9349509e-47160.0
TkA05G252240PF27601DCAF1_4th94610511.5e-2590.0
TkA05G252240PF27600DCAF1_helical100610549e-47160.0
TkA05G252240PF23410Beta-prop_VPS8101410700.0007619.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M086Arabidopsis thalianasp|Q9M086|DCAF1_ARATH DDB1- and CUL4-associated factor homolog 149.600%Swiss-ProtMedium

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