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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G198190
Reference: TK1151 Chr: Chr05 Coordinates: 50190993-50192822 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

588 bp · TkA05G198190|TK1151|cDNA

ATGTTCAACCTCTCCGTCTCCCCCAAGGTATCCGAATCCCCCATCATCACATTTGAAGAAACATCAACCACTCTCTCACTCCCGACACCTCTTTCATATGCGTGGGTGTTTCGATTTTTGAACCTCAGAGACACTAGAATGACTCTACTAAGACCAGTCGCGGAAGATGTGACAATTCTTGATGTGCAACAACAAGAGATCGAGGCTAGAATATCACAGTTAAATGCGGAGATATCAGAGTTCAATGAATCAATAGAAAA...

CDS

Download CDS FASTA

588 bp · TkA05G198190|TK1151|CDS

ATGTTCAACCTCTCCGTCTCCCCCAAGGTATCCGAATCCCCCATCATCACATTTGAAGAAACATCAACCACTCTCTCACTCCCGACACCTCTTTCATATGCGTGGGTGTTTCGATTTTTGAACCTCAGAGACACTAGAATGACTCTACTAAGACCAGTCGCGGAAGATGTGACAATTCTTGATGTGCAACAACAAGAGATCGAGGCTAGAATATCACAGTTAAATGCGGAGATATCAGAGTTCAATGAATCAATAGAAAA...

Protein

Download Protein FASTA

195 aa · TkA05G198190|TK1151|PROTEIN

MFNLSVSPKVSESPIITFEETSTTLSLPTPLSYAWVFRFLNLRDTRMTLLRPVAEDVTILDVQQQEIEARISQLNAEISEFNESIEKELTLIQEVDIKIKELRKMISALNNQQMSVKAAFRKKKDAVKEIDEKISSAEFALVQSAQENASLRSKIVQSPDKLQVNSAKQVEKDVKFLKDKNNGHCYRFANYRVTG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G198190
TK1151 IDTkA05G198190
OH-1004 IDLXL04_018211
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)71.000
Protein coverage (%)TK1151 80.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G198190
LocationChr05:50190993-50192822 (+)
DescriptionSimilar to NUF2: Kinetochore protein NUF2 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g61000 Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity to ensure proper cell division.
MUN (MERISTEM UNSTRUCTURED), encoding a SPC24 homolog of NDC80 kinetochore complex, affects development through cell division in Arabidopsis thaliana.2018 · DOI: 10.1111/tpj.13823

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018211 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0007052 mitotic spindle organization Biological Process
GO:0010342 endosperm cellularization Biological Process
GO:0045132 meiotic chromosome segregation Biological Process
GO:0051301 cell division Biological Process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore Biological Process
GO:0051383 kinetochore organization Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005828 kinetochore microtubule Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0031262 Ndc80 complex Cellular Component
KEGG gene cross-reference
ath:AT1G61000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.471
Rank 1 · TkA05G198190 · TK1151
Cytoplasm0.462
Rank 2 · TkA05G198190 · TK1151
Mitochondrion0.062
Rank 3 · TkA05G198190 · TK1151
Cell membrane0.046
Rank 4 · TkA05G198190 · TK1151
Endoplasmic reticulum0.037
Rank 5 · TkA05G198190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25762HAUS140-163 aa
PF07160SKA147-84 aa
PF04513Baculo_PEP_C48-94 aa
PF06320GCN5L149-103 aa
PF14661HAUS6_N50-136 aa
PF14712Snapin_Pallidin52-117 aa
PF08614ATG1654-151 aa
PF20186DUF654954-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G198190PF25762HAUS1401631.19.7
TkA05G198190PF07160SKA147842.88.4
TkA05G198190PF04513Baculo_PEP_C48940.2112.3
TkA05G198190PF06320GCN5L1491030.01516.3
TkA05G198190PF14661HAUS6_N501360.1112.8
TkA05G198190PF14712Snapin_Pallidin521171.89.8
TkA05G198190PF08614ATG16541510.03515.0
TkA05G198190PF20186DUF6549541310.05414.3
TkA05G198190PF27605ODF2_C551660.04313.7
TkA05G198190PF09278MerR-DNA-bind55760.2112.9
TkA05G198190PF13600DUF4140551092.39.4
TkA05G198190PF07889DUF1664581330.5910.9
TkA05G198190PF06005ZapB58899.37.5
TkA05G198190PF10198Ada3591520.02915.2
TkA05G198190PF22594GTP-eEF1A_C59961.89.7
TkA05G198190PF08702Fib_alpha591462.98.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RXJ0Arabidopsis thalianasp|Q8RXJ0|NUF2_ARATH Kinetochore protein NUF2 homolog38.800%Swiss-ProtMedium

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