TkA05G175760 | RubberDandelionOmics

Gene overview

TkA05G175760

Reference: TK1151 Chr: Chr05 Coordinates: 44909887-44921409 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1752 bp · TkA05G175760|TK1151|cDNA

ATGAACCCCTCTGATGATGATGAAGCTACTCAATCCAATGCTTCTCATCATTCAGAATCCGAACCTCAACATGAACATACCAAAACACCACCTAGAAAACCCGAAGCCGATACTTCGAAATCACCACCAAAACAAACTGAAAAAGATACTAACTTTGATAACCTTGACAACATCGAAAACCTTACCCAAACTCCTCCCATACCACCAGAACAAACCGAACAACCAAATCAAACCAACAAACCTTCACCACATCAATCCGA...

CDS

Download CDS FASTA

1752 bp · TkA05G175760|TK1151|CDS

ATGAACCCCTCTGATGATGATGAAGCTACTCAATCCAATGCTTCTCATCATTCAGAATCCGAACCTCAACATGAACATACCAAAACACCACCTAGAAAACCCGAAGCCGATACTTCGAAATCACCACCAAAACAAACTGAAAAAGATACTAACTTTGATAACCTTGACAACATCGAAAACCTTACCCAAACTCCTCCCATACCACCAGAACAAACCGAACAACCAAATCAAACCAACAAACCTTCACCACATCAATCCGA...

Protein

Download Protein FASTA

583 aa · TkA05G175760|TK1151|PROTEIN

MNPSDDDEATQSNASHHSESEPQHEHTKTPPRKPEADTSKSPPKQTEKDTNFDNLDNIENLTQTPPIPPEQTEQPNQTNKPSPHQSDSEHVDEEIEMEGPGDDMFNPNQATSSTYVKPTDIFTFLPVSFEEENLYSEQQDLFSTKKDDLVKNQSEEFKEIRKELLTSIDTLQADFTSKAQVHAQDVKIKELATQLESKTHEADHRLRVIEMYNAQNQEMNLKLVKLVEDKDQQVLKLSEKVDLKSEQVLKSISEIAVPKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G175760`
TK1151 ID	TkA05G175760
OH-1004 ID	LXL04_023605
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	58.300
Protein coverage (%)	TK1151 99.657 / OH-1004 72.228 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G175760`
Location	Chr05:44909887-44921409 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_023605` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.692

Rank 1 · TkA05G175760 · TK1151

Cytoplasm0.367

Rank 2 · TkA05G175760 · TK1151

Mitochondrion0.031

Rank 3 · TkA05G175760 · TK1151

Cell membrane0.024

Rank 4 · TkA05G175760 · TK1151

Endoplasmic reticulum0.015

Rank 5 · TkA05G175760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06785UPF0242154-248 aa

PF06485Tab2-like_N170-220 aa

PF00932LTD184-241 aa

PF05884ZYG-11_interact210-277 aa

PF06785UPF0242333-367 aa

PF06485Tab2-like_N408-463 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G175760	`PF06785`	UPF0242	154	248	0.51	11.1
TkA05G175760	`PF06485`	Tab2-like_N	170	220	0.043	14.6
TkA05G175760	`PF00932`	LTD	184	241	0.12	13.5
TkA05G175760	`PF05884`	ZYG-11_interact	210	277	0.2	11.8
TkA05G175760	`PF06785`	UPF0242	333	367	0.51	11.1
TkA05G175760	`PF06485`	Tab2-like_N	408	463	0.043	14.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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