TkA05G113790 | RubberDandelionOmics

Gene overview

TkA05G113790

Reference: TK1151 Chr: Chr05 Coordinates: 30371356-30375013 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1847 bp · TkA05G113790|TK1151|cDNA

TGGCTACCTACCCCGAAACTTAATTTGACCCTTTTGATCTCACCAACTCTTTCCTTGTATATAACTCTTGTCCTTGCTCTCTCACAAACTCAAACATCAAACACAAACACAGTCACACCAAGTGTGGGCAGGGGAAAACAGGAAGAATGGCACTTTCACACTCTTCAACGCTGTCCTCCAAAACCCTGCTTCAGACCTACCTTTCTCCCCACCAATCTCACCAACCAAATTTCTCTCTCCTCCCAGCCAACAACTCTTAC...

CDS

Download CDS FASTA

1569 bp · TkA05G113790|TK1151|CDS

ATGGCACTTTCACACTCTTCAACGCTGTCCTCCAAAACCCTGCTTCAGACCTACCTTTCTCCCCACCAATCTCACCAACCAAATTTCTCTCTCCTCCCAGCCAACAACTCTTACCGGAAACCTAAACCCATCTCCGCCGTCCACGCCGCCGAGCCTGCCAAGAACGTAACCAAAGCCCCATCTCCGCCTGCGCCGTCTAGGTGGAGCATTGACAGCTGGAAAACAAAGAAGGCTTTGCAGCTTCCGGAATACCCGAATGA...

Protein

Download Protein FASTA

522 aa · TkA05G113790|TK1151|PROTEIN

MALSHSSTLSSKTLLQTYLSPHQSHQPNFSLLPANNSYRKPKPISAVHAAEPAKNVTKAPSPPAPSRWSIDSWKTKKALQLPEYPNEANLAAVLKTLEDFPPIVFAGEARHLEERLADAAVGKAFLLQGGDCAESFKEFSANNIRDTFRLLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDAYEEKDGVKLPSYKGDNINGDAFTEKSRIPDPDRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFVANSEQGD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G113790`
TK1151 ID	TkA05G113790
OH-1004 ID	LXL04_030134
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	75.400
Protein coverage (%)	TK1151 97.893 / OH-1004 97.826 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G113790

Location Chr05:30371356-30375013 (+)

Description Similar to DHAPS-1: Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39980`	Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030134 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008652 amino acid biosynthetic process Biological Process

GO:0009073 aromatic amino acid family biosynthetic process Biological Process

GO:0009423 chorismate biosynthetic process Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

nta:107775732

sly:544153

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.966

Rank 1 · TkA05G113790 · TK1151

Mitochondrion0.057

Rank 2 · TkA05G113790 · TK1151

Cytoplasm0.030

Rank 3 · TkA05G113790 · TK1151

Peroxisome0.021

Rank 4 · TkA05G113790 · TK1151

Nucleus0.017

Rank 5 · TkA05G113790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01474DAHP_synth_268-504 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G113790	`PF01474`	DAHP_synth_2	68	504	7.1e-205	681.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P29976`	Arabidopsis thaliana	sp\|P29976\|AROF_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic	80.000%	Swiss-Prot	High

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