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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G111560
Reference: TK1151 Chr: Chr05 Coordinates: 29896365-29903972 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4344 bp · TkA05G111560|TK1151|cDNA

ATGACTGAAAGAAACAAGCAACGAGGAAAGAATAAGATTTTGTTTACAACCGGAGAGACGATTGAAGAACAAAATGACGTGAGAGATAATACAGAGGTGCATTTAAATCCAGTAAATGAAGATGATCCATACGATTTTGTTTATTATCGTACCCCTATAGTACTTCGTGTTTTGGCTGGAAGGACAGAATGGAATCATTGTGGAGCAATCAAATTCAAATCCGAATTTGCTACGTTTTGTTGCATGAATGGAAAAACTAA...

CDS

Download CDS FASTA

4344 bp · TkA05G111560|TK1151|CDS

ATGACTGAAAGAAACAAGCAACGAGGAAAGAATAAGATTTTGTTTACAACCGGAGAGACGATTGAAGAACAAAATGACGTGAGAGATAATACAGAGGTGCATTTAAATCCAGTAAATGAAGATGATCCATACGATTTTGTTTATTATCGTACCCCTATAGTACTTCGTGTTTTGGCTGGAAGGACAGAATGGAATCATTGTGGAGCAATCAAATTCAAATCCGAATTTGCTACGTTTTGTTGCATGAATGGAAAAACTAA...

Protein

Download Protein FASTA

1447 aa · TkA05G111560|TK1151|PROTEIN

MTERNKQRGKNKILFTTGETIEEQNDVRDNTEVHLNPVNEDDPYDFVYYRTPIVLRVLAGRTEWNHCGAIKFKSEFATFCCMNGKTKLASTHIPPELYHLFTSQDEIGHMFRDNIRAYNRNFSLTSMGVTLDNDLTNMKSGVYTFRAHGGIYHRIDQLVPRDGKPSLRDLGPLDNYRVTLNASVELDQRVYNRPTTAEVAGCYDPLSHPLFFPNGESGWYSRIARNSVSINEIVVDEENMEEDVEEDLKDQLLIRHILGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G111560
TK1151 IDTkA05G111560
OH-1004 IDLXL04_003847
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)62.500
Protein coverage (%)TK1151 77.056 / OH-1004 72.951
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G111560
LocationChr05:29896365-29903972 (-)
DescriptionSimilar to RE1: Retrovirus-related Pol polyprotein from transposon RE1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003847 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0003676 nucleic acid binding Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.783
Rank 1 · TkA05G111560 · TK1151
Cytoplasm0.271
Rank 2 · TkA05G111560 · TK1151
Mitochondrion0.036
Rank 3 · TkA05G111560 · TK1151
Cell membrane0.024
Rank 4 · TkA05G111560 · TK1151
Endoplasmic reticulum0.018
Rank 5 · TkA05G111560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14214Helitron_like_N248-282 aa
PF13961DUF4219355-371 aa
PF14223Retrotran_gag_2405-551 aa
PF00098zf-CCHC677-693 aa
PF30379SLU7_N678-692 aa
PF14214Helitron_like_N765-804 aa
PF22936Pol_BBD859-934 aa
PF13976gag_pre-integrs963-1035 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G111560PF14214Helitron_like_N2482828.2e-0730.1
TkA05G111560PF13961DUF42193553710.04714.2
TkA05G111560PF14223Retrotran_gag_24055511.4e-1248.4
TkA05G111560PF00098zf-CCHC6776934.7e-0524.0
TkA05G111560PF30379SLU7_N6786920.02214.9
TkA05G111560PF14214Helitron_like_N7658048.2e-0730.1
TkA05G111560PF22936Pol_BBD8599342.1e-1557.5
TkA05G111560PF13976gag_pre-integrs96310357e-1245.7
TkA05G111560PF00665rve104911503.6e-1350.4
TkA05G111560PF29688TnsB_C107111004.8e-0730.4
TkA05G111560PF29688TnsB_C110811704.8e-0730.4
TkA05G111560PF13683rve_3113911762.4e-0524.7
TkA05G111560PF22936Pol_BBD122312512.1e-1557.5
TkA05G111560PF25597SH3_retrovirus122412789.7e-1761.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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