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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G110710
Reference: TK1151 Chr: Chr05 Coordinates: 29691282-29694379 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2588 bp · TkA05G110710|TK1151|cDNA

TCTGGTTATTAAAAAAGGAATCGTCAAAGAGCGTTGATTAAACGAGTTCTTGTTGATTCGTCTTCAACAGGGGCAGCAAGAAAAGAATCGACAGTATGTATACCACAAAGTTCTTGTAGATTTTCGATGCTTGGCGTCATAGTTAACCTTCTTTTGCGACTAATTTCAATATGTTCTTGTTGCCTATAAACTGCAGAAGATCTCAATGATTATCTTCGCTCTCGAACTTTTTACAGAAAAGCTTGAAACCACACAAAATC...

CDS

Download CDS FASTA

1746 bp · TkA05G110710|TK1151|CDS

ATGAGTTATAGAAAAGTGCCACACCGGATCTCTCTACTAATTCGTAACAAGACTCGATCATTTCAATCAGATTCTCACGCCAAACAATCCACTCTTCTCATCAAGGCATACCTCGATACCGGCCTGCTCAAACAGGCACGCCAACTGTTTGAAGAAATGCCTGAACGAGACGTGGTTGCATGGACGGCAATGATTTCTGGGTACACCGCTTATAACCACCACAACTGTGCATGGATGATGTTCAAAGATATGATGAGGGA...

Protein

Download Protein FASTA

581 aa · TkA05G110710|TK1151|PROTEIN

MSYRKVPHRISLLIRNKTRSFQSDSHAKQSTLLIKAYLDTGLLKQARQLFEEMPERDVVAWTAMISGYTAYNHHNCAWMMFKDMMRESCDHPNAYTFSSVLKACKGMKSLSCGAISHGLSLKHGLVGSSIYVDNALLDMYATCCISMKYACSMFQEIPVKNQVSWTTLITGFTHRDNGVAALQVFQQMFVEEVEKSAYSFSIAIRACAGITSYTYGTQIHASVVKHGFDHNIPVTNSLLDMYCKCNHFQEAENCFNETTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G110710
TK1151 IDTkA05G110710
OH-1004 IDLXL04_019993
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.600
Protein coverage (%)TK1151 100.000 / OH-1004 90.781
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G110710
LocationChr05:29691282-29694379 (-)
DescriptionSimilar to PCMP-E64: Putative pentatricopeptide repeat-containing protein At1g56570
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g56570 Putative pentatricopeptide repeat-containing protein At1g56570. No verified direct reference in this release
At3g49170 May play a role in embryogenesis. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At3g15130 Putative pentatricopeptide repeat-containing protein At3g15130. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019993 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009749 response to glucose Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G56570
ath:AT2G13600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.673
Rank 1 · TkA05G110710 · TK1151
Plastid0.186
Rank 2 · TkA05G110710 · TK1151
Nucleus0.045
Rank 3 · TkA05G110710 · TK1151
Cytoplasm0.034
Rank 4 · TkA05G110710 · TK1151
Cell membrane0.006
Rank 5 · TkA05G110710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17049AEP127-68 aa
PF29070MSC6_N28-106 aa
PF01535PPR31-57 aa
PF13812PPR_331-55 aa
PF23276TPR_2431-59 aa
PF13041PPR_232-57 aa
PF14559TPR_1932-57 aa
PF13428TPR_1432-57 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G110710PF17049AEP127680.1112.2
TkA05G110710PF29070MSC6_N281063.9e-1659.9
TkA05G110710PF01535PPR31577.6e-45148.8
TkA05G110710PF13812PPR_331553.5e-2072.6
TkA05G110710PF23276TPR_2431593.5e-0627.7
TkA05G110710PF13041PPR_232572.5e-57191.5
TkA05G110710PF14559TPR_1932573.2e-0628.1
TkA05G110710PF13428TPR_1432570.005917.9
TkA05G110710PF00637Clathrin32540.1312.7
TkA05G110710PF24760TPR_IF140_C32530.1613.1
TkA05G110710PF12854PPR_135531.9e-2692.2
TkA05G110710PF07719TPR_236520.08813.7
TkA05G110710PF13374TPR_1036520.6810.7
TkA05G110710PF22330Rib_mS39_PPR44720.0007620.0
TkA05G110710PF13041PPR_2561042.5e-57191.5
TkA05G110710PF12854PPR_156841.9e-2692.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FXA9Arabidopsis thalianasp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g5657051.700%Swiss-ProtHigh
Q5G1T1Arabidopsis thalianasp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic36.000%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic35.600%Swiss-ProtMedium
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365035.000%Swiss-ProtMedium
P0C898Arabidopsis thalianasp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g1513033.800%Swiss-ProtMedium

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