TkA05G067300 | RubberDandelionOmics

Gene overview

TkA05G067300

Reference: TK1151 Chr: Chr05 Coordinates: 17960095-17966145 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1293 bp · TkA05G067300|TK1151|cDNA

ATGCCAGAAAGCCGACAGCTTTTCTTGTTCCGCCATCAAGTACAGAAGGGAGTGTACGCCGGAATCTATGGCGGTCCAGTCAGTCCCAGTTCTACTACGATAACAGATGCAGTTGTTGCGGCATATATACTAAACGCGACACTCGTAGTCCCGAAGCTCGACCAAAAGTCATATTGGAAAGACGAAAGAATTGATATTGAAACGGTTACCGAGGTAGATTCTGTTCTTATGGGGTCCATTTTATGCAGCAATTTCTCTGA...

CDS

Download CDS FASTA

1293 bp · TkA05G067300|TK1151|CDS

ATGCCAGAAAGCCGACAGCTTTTCTTGTTCCGCCATCAAGTACAGAAGGGAGTGTACGCCGGAATCTATGGCGGTCCAGTCAGTCCCAGTTCTACTACGATAACAGATGCAGTTGTTGCGGCATATATACTAAACGCGACACTCGTAGTCCCGAAGCTCGACCAAAAGTCATATTGGAAAGACGAAAGAATTGATATTGAAACGGTTACCGAGGTAGATTCTGTTCTTATGGGGTCCATTTTATGCAGCAATTTCTCTGA...

Protein

Download Protein FASTA

430 aa · TkA05G067300|TK1151|PROTEIN

MPESRQLFLFRHQVQKGVYAGIYGGPVSPSSTTITDAVVAAYILNATLVVPKLDQKSYWKDERIDIETVTEVDSVLMGSILCSNFSEIFDVIGLYHISQKKLRSLKSFLLLTEELCILIELECPENAIKGAINLEWFESDMLAFSGCYYGGGDKERQELQQIRRRWKTLHGTKQGRCPLTPEEVGLMLRALGYGSDVHIYVASGEVYGGEDTLAPLKALFPNIHSKATITTKEELAPFSSYSSRMAALDFIVCDESDVFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G067300`
TK1151 ID	TkA05G067300
OH-1004 ID	LXL04_019594
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	56.200
Protein coverage (%)	TK1151 92.791 / OH-1004 62.920 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G067300

Location Chr05:17960095-17966145 (+)

Description Similar to OFUT6: O-fucosyltransferase 6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76270`	O-fucosyltransferase 16.	No verified direct reference in this release
`At1g20550`	O-fucosyltransferase 6.	No verified direct reference in this release
`At4g38390`	Protein ROOT HAIR SPECIFIC 17.	No verified direct reference in this release
`At4g16650`	O-fucosyltransferase 29.	No verified direct reference in this release
`At5g64600`	O-fucosyltransferase 38.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019594 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0016020 membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G20550

ath:AT1G22460

ath:AT1G76270

ath:AT4G16650

ath:AT4G38390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.214

Rank 1 · TkA05G067300 · TK1151

Cytoplasm0.209

Rank 2 · TkA05G067300 · TK1151

Extracellular0.168

Rank 3 · TkA05G067300 · TK1151

Golgi apparatus0.144

Rank 4 · TkA05G067300 · TK1151

Nucleus0.142

Rank 5 · TkA05G067300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10250O-FucT33-90 aa

PF10250O-FucT137-277 aa

PF00270DEAD151-172 aa

PF00270DEAD205-273 aa

PF26130PB1-like292-363 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G067300	`PF10250`	O-FucT	33	90	8.3e-49	167.8
TkA05G067300	`PF10250`	O-FucT	137	277	8.3e-49	167.8
TkA05G067300	`PF00270`	DEAD	151	172	0.25	11.8
TkA05G067300	`PF00270`	DEAD	205	273	0.25	11.8
TkA05G067300	`PF26130`	PB1-like	292	363	1.7e-12	48.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q949U4`	Arabidopsis thaliana	sp\|Q949U4\|OFT16_ARATH O-fucosyltransferase 16	56.000%	Swiss-Prot	Medium
`F4HSU3`	Arabidopsis thaliana	sp\|F4HSU3\|OFUT6_ARATH O-fucosyltransferase 6	54.700%	Swiss-Prot	Medium
`Q9SVE6`	Arabidopsis thaliana	sp\|Q9SVE6\|RHS17_ARATH Protein ROOT HAIR SPECIFIC 17	50.700%	Swiss-Prot	Medium
`Q8LPF8`	Arabidopsis thaliana	sp\|Q8LPF8\|OFT29_ARATH O-fucosyltransferase 29	45.000%	Swiss-Prot	Medium
`F4KF16`	Arabidopsis thaliana	sp\|F4KF16\|OFT38_ARATH O-fucosyltransferase 38	33.300%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card