TkA05G053340 | RubberDandelionOmics

Gene overview

TkA05G053340

Reference: TK1151 Chr: Chr05 Coordinates: 14190189-14191164 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

817 bp · TkA05G053340|TK1151|cDNA

GAAACATCCTCAAGACATAACAGCTCCTGGGGTACGAATTCTAGCAGCATGGTCACCTATGGCTCGAATTAGCCAATCGGAAGGAGACAACAGAGCTGTACCTTTTAATATGTTATCAGGGACATCAATGGCATGCCCACATGTCAGCGGTATAGCCGCTTATATCAAAACATTCAACCCTAAATGGTCTCCGGCAGCATTAATAAATCAGCTCTCATGACAACAGCTTCCGCTATGAGTGCCGACATCAACACGGATGC...

CDS

Download CDS FASTA

579 bp · TkA05G053340|TK1151|CDS

ATGGTCTCCGGCAGCATTAATAAATCAGCTCTCATGACAACAGCTTCCGCTATGAGTGCCGACATCAACACGGATGCTGAATTTGCATATGGAGCTGGTAACCTTAATCCATTGAAAGCTATGAATCCTGGTCTGGTATACGATGTTGTTGAGGTCGATTATGTAAGATTTTTGTGTGAAGGTGGATACAACACTAAAGATATAAGAATTATTACTGGTGTTAATAGTAGTAGATGTTCTCATCACAAGGAACAAACCAA...

Protein

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192 aa · TkA05G053340|TK1151|PROTEIN

MVSGSINKSALMTTASAMSADINTDAEFAYGAGNLNPLKAMNPGLVYDVVEVDYVRFLCEGGYNTKDIRIITGVNSSRCSHHKEQTNDLNYPAFVIPALRNKAINVTFSRTVTNVGSAKSRYRGSITPPRVGDLGIEIKPNFLQFRKIGEKLSFKMTVQTTIQKLDSAIVSGALTWDDGVHQVRSPIVVHVP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G053340`
TK1151 ID	TkA05G053340
OH-1004 ID	LXL04_019462
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.200
Protein coverage (%)	TK1151 96.354 / OH-1004 36.853 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G053340

Location Chr05:14190189-14191164 (+)

Description Similar to Cucumisin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15040`	Subtilisin-like protease SBT4.2.	No verified direct reference in this release
`At5g59190`	Subtilisin-like protease SBT4.3.	No verified direct reference in this release
`At5g59100`	Subtilisin-like protease SBT4.4.	No verified direct reference in this release
`At5g59090`	Subtilisin-like protease SBT4.12.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019462 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009609 response to symbiotic bacterium Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004252 serine-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G46850

ath:AT5G59090

ath:AT5G59100

ath:AT5G59120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.831

Rank 1 · TkA05G053340 · TK1151

Cell membrane0.058

Rank 2 · TkA05G053340 · TK1151

Cytoplasm0.050

Rank 3 · TkA05G053340 · TK1151

Endoplasmic reticulum0.038

Rank 4 · TkA05G053340 · TK1151

Lysosome / Vacuole0.033

Rank 5 · TkA05G053340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29663F44E2_943-86 aa

PF17766fn3_688-189 aa

PF29663F44E2_9127-165 aa

PF15150PMAIP1142-165 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G053340	`PF29663`	F44E2_9	43	86	0.2	12.6
TkA05G053340	`PF17766`	fn3_6	88	189	1.6e-27	96.3
TkA05G053340	`PF29663`	F44E2_9	127	165	0.2	12.6
TkA05G053340	`PF15150`	PMAIP1	142	165	0.03	14.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23357`	Arabidopsis thaliana	sp\|O23357\|SBT42_ARATH Subtilisin-like protease SBT4.2	43.400%	Swiss-Prot	Medium
`Q9FIF8`	Arabidopsis thaliana	sp\|Q9FIF8\|SBT43_ARATH Subtilisin-like protease SBT4.3	43.700%	Swiss-Prot	Medium
`Q9FGU3`	Arabidopsis thaliana	sp\|Q9FGU3\|SBT44_ARATH Subtilisin-like protease SBT4.4	40.600%	Swiss-Prot	Medium
`Q8L7D2`	Arabidopsis thaliana	sp\|Q8L7D2\|SBT4C_ARATH Subtilisin-like protease SBT4.12	39.900%	Swiss-Prot	Medium

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