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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G049820
Reference: TK1151 Chr: Chr05 Coordinates: 13160392-13163988 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2570 bp · TkA05G049820|TK1151|cDNA

AAAACATCCCGATGAGTGCCAGACGAATCTCCGTCATCCAAAACCCTTCGCACTTGATCACTTCTTCCACTTGATTAGAAAATCCAATCCGGAAATTGAAAATCATTTCTTACTTGTTTAGATTTTCCATGAAGAACCCACGTATATGATCTGTTTCTGAAGTCGGGTTTCAATATTTTCTTACACAAGAGAGTCCAGAAACAGGTGGAGATCGATAAAGCCATTAGAGATAGCGATGTTCAAAGGCTGAAGCGCCATTT...

CDS

Download CDS FASTA

1701 bp · TkA05G049820|TK1151|CDS

ATGGAATCTTCGGCAAAATCAGCAGATGAAGTGGTGGAACAGATAATGAGAATTCACAGATCTCTTCCTCCAAGACCTGGAATTGAAGATGTTGAAGGTGCACAAATACTGATCCGAAATGCAGATAGCGAACTTCAGTCACGTCTGGAGTCCATTTCTAACCTAAAAAAGCAAAAAGGCGTTCCTGATGAACTATTCAATGTGTTGGTAGAGATGCAAAAGCATTTAGCCAATTTCCACGCCATGGAACAAAAGAGGGA...

Protein

Download Protein FASTA

566 aa · TkA05G049820|TK1151|PROTEIN

MESSAKSADEVVEQIMRIHRSLPPRPGIEDVEGAQILIRNADSELQSRLESISNLKKQKGVPDELFNVLVEMQKHLANFHAMEQKREAIKLLDLENYHILFDEMIQRASKCVVPNGSDNNNNNNNNTQSVSSTPITLSPLTTPASYSGVNLTASSPTPVKTSNLFTRDDSYVNKLESTTFSDGIRRVMRSSDTSSRPMIVDSTLKPVITSGQDGDKLSHIKLASLIEVSSKKGAKDLDLCNKLMDQIEWLPDSIGKLSTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G049820
TK1151 IDTkA05G049820
OH-1004 IDLXL04_019411
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G049820
LocationChr05:13160392-13163988 (-)
DescriptionSimilar to PIRL4: Plant intracellular Ras-group-related LRR protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g35470 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
At2g17440 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0511700 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Os10g0572300 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019411 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009416 response to light stimulus Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0055046 microgametogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT2G17440
ath:AT3G26500
ath:AT4G35470
dosa:Os08g0511700
dosa:Os10g0572300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.372
Rank 1 · TkA05G049820 · TK1151
Cell membrane0.317
Rank 2 · TkA05G049820 · TK1151
Nucleus0.258
Rank 3 · TkA05G049820 · TK1151
Lysosome / Vacuole0.090
Rank 4 · TkA05G049820 · TK1151
Golgi apparatus0.085
Rank 5 · TkA05G049820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23952LRR_EndoS51-98 aa
PF24048LRR_NXF1-567-97 aa
PF23952LRR_EndoS216-291 aa
PF24758LRR_At5g56370223-295 aa
PF12799LRR_4236-250 aa
PF24048LRR_NXF1-5236-270 aa
PF13855LRR_8238-293 aa
PF00560LRR_1241-257 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G049820PF23952LRR_EndoS51980.0005520.9
TkA05G049820PF24048LRR_NXF1-567970.1212.7
TkA05G049820PF23952LRR_EndoS2162910.0005520.9
TkA05G049820PF24758LRR_At5g563702232952.3e-0731.4
TkA05G049820PF12799LRR_42362501.8e-2589.1
TkA05G049820PF24048LRR_NXF1-52362700.1212.7
TkA05G049820PF13855LRR_82382932.8e-30104.6
TkA05G049820PF00560LRR_12412578.5e-2170.3
TkA05G049820PF23286LRR_132452819.7e-0935.9
TkA05G049820PF23598LRR_142462903.2e-36125.5
TkA05G049820PF23211LRR_LRWD12512976.3e-0936.5
TkA05G049820PF23211LRR_LRWD12563416.3e-0936.5
TkA05G049820PF25013LRR_Zer-12563380.0006520.6
TkA05G049820PF13516LRR_62582710.0002221.7
TkA05G049820PF12799LRR_42592971.8e-2589.1
TkA05G049820PF00560LRR_12602808.5e-2170.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVW8Arabidopsis thalianasp|Q9SVW8|PIRL4_ARATH Plant intracellular Ras-group-related LRR protein 467.600%Swiss-ProtHigh
Q5G5E0Arabidopsis thalianasp|Q5G5E0|PIRL5_ARATH Plant intracellular Ras-group-related LRR protein 565.400%Swiss-ProtHigh
Q6Z8P4Oryza sativa subsp. japonicasp|Q6Z8P4|PIRL4_ORYSJ Plant intracellular Ras-group-related LRR protein 458.200%Swiss-ProtHigh
Q8S7M7Oryza sativa subsp. japonicasp|Q8S7M7|PIRL5_ORYSJ Plant intracellular Ras-group-related LRR protein 533.100%Swiss-ProtLow

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