TkA04G505970 | RubberDandelionOmics

Gene overview

TkA04G505970

Reference: TK1151 Chr: Chr04 Coordinates: 127809908-127811719 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1319 bp · TkA04G505970|TK1151|cDNA

TCGATTCATAACAATAACAACGTGAACGTCAGGCCACACGATCAAAACCCTTGGAATCTTAGCTCATTTCAATTCGGATCCAAGCTTCTGGAGATCACAATTCGACAATTTCTAGGTTCCTTTCGTTTTCAATAACATACTCAGCGATGAATCCAAATGAATCATCCAATCCAACGCAAGAGCCGGTGAAGCCCGACGGTTCGCACACCACTGACGACGCTACAATCCCGAAGCAAGACGACCTTCCTGCTTCAAACCTA...

CDS

Download CDS FASTA

885 bp · TkA04G505970|TK1151|CDS

ATGAATCCAAATGAATCATCCAATCCAACGCAAGAGCCGGTGAAGCCCGACGGTTCGCACACCACTGACGACGCTACAATCCCGAAGCAAGACGACCTTCCTGCTTCAAACCTACCTTCCAGTGACAATTTTGCATCCGTCTCCGCCGTTCATGAAAAAGGACCAGATGCACCGCCTGCTTTCGGAGAACCGTCGCAAACCACCGGTTCAACGCCACAGCATGATCCAAGCGCCACTACTGCGCCTGACGCGTCAAATCC...

Protein

Download Protein FASTA

294 aa · TkA04G505970|TK1151|PROTEIN

MNPNESSNPTQEPVKPDGSHTTDDATIPKQDDLPASNLPSSDNFASVSAVHEKGPDAPPAFGEPSQTTGSTPQHDPSATTAPDASNPYVSAASARDSSGKNSMESVRVMFRRWAKRAADATKKGQEYAGDMWQHLKTGPSVTDAAVGRIAQGTKVLAEGGYEKIFKTTFQLTIPEERLLKSYACYLSTSAGPVIGVLYMSTAKLAFCSDNPLPYKVGEEKKWSYYKVVIPLVQLKTVRPSRSKTNPAEKYIQVISIDNHE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G505970`
TK1151 ID	TkA04G505970
OH-1004 ID	LXL04_039124
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G505970

Location Chr04:127809908-127811719 (+)

Description Similar to FIP1: GEM-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28200`	GEM-like protein 1.	No verified direct reference in this release
`At2g22475`	Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells.	No verified direct reference in this release
`At4g40100`	Putative GEM-like protein 3.	No verified direct reference in this release
`At5g13200`	GEM-like protein 5.	No verified direct reference in this release
`At4g01600`	GEM-like protein 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039124 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009637 response to blue light Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009845 seed germination Biological Process

GO:0010026 trichome differentiation Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010482 regulation of epidermal cell division Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0048765 root hair cell differentiation Biological Process

GO:0098755 maintenance of seed dormancy by absisic acid Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G28200

ath:AT2G22475

ath:AT4G01600

ath:AT4G40100

ath:AT5G13200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.440

Rank 1 · TkA04G505970 · TK1151

Cell membrane0.302

Rank 2 · TkA04G505970 · TK1151

Nucleus0.185

Rank 3 · TkA04G505970 · TK1151

Endoplasmic reticulum0.184

Rank 4 · TkA04G505970 · TK1151

Golgi apparatus0.170

Rank 5 · TkA04G505970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14303NAM-associated5-38 aa

PF14303NAM-associated63-138 aa

PF02893GRAM164-276 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G505970	`PF14303`	NAM-associated	5	38	0.014	16.9
TkA04G505970	`PF14303`	NAM-associated	63	138	0.014	16.9
TkA04G505970	`PF02893`	GRAM	164	276	4.7e-19	69.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SE96`	Arabidopsis thaliana	sp\|Q9SE96\|GEML1_ARATH GEM-like protein 1	64.200%	Swiss-Prot	High
`Q8S8F8`	Arabidopsis thaliana	sp\|Q8S8F8\|GEM_ARATH GLABRA2 expression modulator	66.700%	Swiss-Prot	Medium
`Q9M063`	Arabidopsis thaliana	sp\|Q9M063\|GEML3_ARATH Putative GEM-like protein 3	57.600%	Swiss-Prot	Medium
`Q9LYV6`	Arabidopsis thaliana	sp\|Q9LYV6\|GEML5_ARATH GEM-like protein 5	42.900%	Swiss-Prot	Medium
`Q9M122`	Arabidopsis thaliana	sp\|Q9M122\|GEML2_ARATH GEM-like protein 2	40.100%	Swiss-Prot	Medium

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