TkA04G498700 | RubberDandelionOmics

Gene overview

TkA04G498700

Reference: TK1151 Chr: Chr04 Coordinates: 125937941-125939265 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

492 bp · TkA04G498700|TK1151|cDNA

ATGTTACTTGGACTTATAACCAATGCTCAAATTAACTCTATACACATTGCTAACAGTGTGGGAGCACCTAACAAAGCTCCCATACTTGTTACAGATGAATATAATCACTGGGTCACTCGATTTAAAGGTTACATAAAAGGCAAAGATGAAGAGATCTGGCGGTCCATCGAAAAAGGACCACAGAAGCCATCTCTACAACGTCCAGCAACAGAAGCTGAAGCTGCTCTCGGAGGGGCTGCCATAGTTACACTCACTCAGGA...

CDS

Download CDS FASTA

492 bp · TkA04G498700|TK1151|CDS

ATGTTACTTGGACTTATAACCAATGCTCAAATTAACTCTATACACATTGCTAACAGTGTGGGAGCACCTAACAAAGCTCCCATACTTGTTACAGATGAATATAATCACTGGGTCACTCGATTTAAAGGTTACATAAAAGGCAAAGATGAAGAGATCTGGCGGTCCATCGAAAAAGGACCACAGAAGCCATCTCTACAACGTCCAGCAACAGAAGCTGAAGCTGCTCTCGGAGGGGCTGCCATAGTTACACTCACTCAGGA...

Protein

Download Protein FASTA

163 aa · TkA04G498700|TK1151|PROTEIN

MLLGLITNAQINSIHIANSVGAPNKAPILVTDEYNHWVTRFKGYIKGKDEEIWRSIEKGPQKPSLQRPATEAEAALGGAAIVTLTQDDLLKLKADKQVVSELNCAIPPDVFDLVEDCVSAHETWNTLHQLFAGTEAAKEKKMTSAINAFSRFKALPSESLQET

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G498700`
TK1151 ID	TkA04G498700
OH-1004 ID	LXL04_033961
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.200
Protein coverage (%)	TK1151 96.933 / OH-1004 29.259 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G498700`
Location	Chr04:125937941-125939265 (-)
Description	Similar to At3g58530: F-box protein At3g58530
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033961` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0010311 lateral root formation Biological Process GO:0016567 protein ubiquitination Biological Process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process GO:0051781 positive regulation of cell division Biological Process GO:0071365 cellular response to auxin stimulus Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0019005 SCF ubiquitin ligase complex Cellular Component
KEGG gene cross-reference	ath:AT1G21410 ath:AT3G58530 bta:531211 hsa:144699 mmu:101358 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.617

Rank 1 · TkA04G498700 · TK1151

Nucleus0.393

Rank 2 · TkA04G498700 · TK1151

Extracellular0.049

Rank 3 · TkA04G498700 · TK1151

Mitochondrion0.048

Rank 4 · TkA04G498700 · TK1151

Endoplasmic reticulum0.047

Rank 5 · TkA04G498700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223Retrotran_gag_292-154 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G498700	`PF14223`	Retrotran_gag_2	92	154	1.2e-06	29.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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