TkA04G474640 | RubberDandelionOmics

Gene overview

TkA04G474640

Reference: TK1151 Chr: Chr04 Coordinates: 119871960-119877963 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1992 bp · TkA04G474640|TK1151|cDNA

AATGAGTCAATTTCTATCAAAGGAAACATTAGTAGTTTAATCTATGGCCATGGCCTTCTCCAAATTCGTGTTTCTTACTCTCCTTTTCTTACCCTTGTTCATACATGTATCCTCCCAAACCATAAGCCATCAAGAACAAACCATGGAGAATCCATTAATTCTCCAAGCTTGTAGCAATATCAAAGACGAAAGAACATGTCTCTCGAATGTGAAATCGTTTCTTGATAATGACCACCCAAACAACCACAAGCCCGACTCCA...

CDS

Download CDS FASTA

1626 bp · TkA04G474640|TK1151|CDS

ATGGCCATGGCCTTCTCCAAATTCGTGTTTCTTACTCTCCTTTTCTTACCCTTGTTCATACATGTATCCTCCCAAACCATAAGCCATCAAGAACAAACCATGGAGAATCCATTAATTCTCCAAGCTTGTAGCAATATCAAAGACGAAAGAACATGTCTCTCGAATGTGAAATCGTTTCTTGATAATGACCACCCAAACAACCACAAGCCCGACTCCATCCTGAGAGCCGCCCTCAAGGCAACACTCAAAGAGACACATGT...

Protein

Download Protein FASTA

541 aa · TkA04G474640|TK1151|PROTEIN

MAMAFSKFVFLTLLFLPLFIHVSSQTISHQEQTMENPLILQACSNIKDERTCLSNVKSFLDNDHPNNHKPDSILRAALKATLKETHVAIQSFTRFTSLSSSSREQMAIEDCKELLDFSVSELAWSLAEMKEIQAGSQDPHYKNNLKSWLSAALSNQDTCLEGFEGTDRHLESFIRGSLMQVTQLISNVLSLYTQLHVLPFKPPRNHDDDTTNTFFPKWINEGDRNLMLGSPNGMHVDVVVALDGSGRYRSISEAINDAPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G474640`
TK1151 ID	TkA04G474640
OH-1004 ID	LXL04_038888
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 90.772 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G474640

Location Chr04:119871960-119877963 (+)

Description Similar to PME22: Putative pectinesterase/pectinesterase inhibitor 22

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g05620`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At3g43270`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At4g33220`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038888 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0042545 cell wall modification Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0050829 defense response to Gram-negative bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0030599 pectinesterase activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT3G05620

ath:AT3G43270

ath:AT4G33220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.449

Rank 1 · TkA04G474640 · TK1151

Lysosome / Vacuole0.161

Rank 2 · TkA04G474640 · TK1151

Cell membrane0.137

Rank 3 · TkA04G474640 · TK1151

Cytoplasm0.114

Rank 4 · TkA04G474640 · TK1151

Endoplasmic reticulum0.104

Rank 5 · TkA04G474640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04043PMEI38-191 aa

PF13712Glyco_tranf_2_5228-288 aa

PF01095Pectinesterase237-524 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G474640	`PF04043`	PMEI	38	191	4.8e-29	102.2
TkA04G474640	`PF13712`	Glyco_tranf_2_5	228	288	0.1	12.8
TkA04G474640	`PF01095`	Pectinesterase	237	524	3.2e-141	470.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M9W7`	Arabidopsis thaliana	sp\|Q9M9W7\|PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22	67.200%	Swiss-Prot	High
`Q9LXK7`	Arabidopsis thaliana	sp\|Q9LXK7\|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32	53.200%	Swiss-Prot	High
`Q9SMY7`	Arabidopsis thaliana	sp\|Q9SMY7\|PME44_ARATH Probable pectinesterase/pectinesterase inhibitor 44	52.500%	Swiss-Prot	High

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