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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G412280
Reference: TK1151 Chr: Chr04 Coordinates: 103836670-103842273 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1456 bp · TkA04G412280|TK1151|cDNA

ATGATCTGTGTTTTCTTGTTTCTTCATTGGTTTTTTTATGATCGCGACAATGATGAAGGGAGAAATCGAGAAAAGCTTCTACGGTTATTTTTACTCAAATACGCTTTACAGATTCCGACCTGCCATCTGCTTCCCATCTCTCGATTTCTCCACGAAACAGGAAAGAGGTTAATTGGACTAAAGAATATATTAGCAAGACAACTACAGAACATGCCTAAGGAATACATTGTTTGTCTTGTGATGGATAGGTATGATAGATC...

CDS

Download CDS FASTA

1269 bp · TkA04G412280|TK1151|CDS

ATGATCTGTGTTTTCTTGTTTCTTCATTGGTTTTTTTATGATCGCGACAATGATGAAGGGAGAAATCGAGAAAAGCTTCTACGGTTATTTTTACTCAAATACGCTTTACAGATTCCGACCTGCCATCTGCTTCCCATCTCTCGATTTCTCCACGAAACAGGAAAGAGGTTAATTGGACTAAAGAATATATTAGCAAGACAACTACAGAACATGCCTAAGGAATACATTGTTTGTCTTGTGATGGATAGGTATGATAGATC...

Protein

Download Protein FASTA

422 aa · TkA04G412280|TK1151|PROTEIN

MICVFLFLHWFFYDRDNDEGRNREKLLRLFLLKYALQIPTCHLLPISRFLHETGKRLIGLKNILARQLQNMPKEYIVCLVMDRYDRSQICNGYWWNYMPPLCQGFTKDIFLEKERWHGYLKDYDGGILMECKIDPKFPYTDLSTMIHHQRRKHLACFDYHNDGLIYHWETFQGSKIKMVFKGFKFITERAHHRDHLIREMAAILARKSISALRNRQFVITGQSLHAHNIGARSFATKHSFSTDKDDEEREKLAIEMSKDW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G412280
TK1151 IDTkA04G412280
OH-1004 IDLXL04_017473
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.300
Protein coverage (%)TK1151 52.844 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G412280
LocationChr04:103836670-103842273 (-)
DescriptionSimilar to NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79010 Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. No verified direct reference in this release
At1g16700 Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017473 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006120 mitochondrial electron transport, NADH to ubiquinone Biological Process
GO:0032981 mitochondrial respiratory chain complex I assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0045271 respiratory chain complex I Cellular Component
GO:0003954 NADH dehydrogenase activity Molecular Function
GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function
GO:0016651 oxidoreductase activity, acting on NAD(P)H Molecular Function
GO:0046872 metal ion binding Molecular Function
GO:0051539 4 iron, 4 sulfur cluster binding Molecular Function
KEGG gene cross-reference
ath:AT1G16700
ath:AT1G79010
nta:107776985
sot:102589342
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.711
Rank 1 · TkA04G412280 · TK1151
Plastid0.171
Rank 2 · TkA04G412280 · TK1151
Cytoplasm0.056
Rank 3 · TkA04G412280 · TK1151
Nucleus0.047
Rank 4 · TkA04G412280 · TK1151
Endoplasmic reticulum0.037
Rank 5 · TkA04G412280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05042Caleosin9-18 aa
PF05042Caleosin151-175 aa
PF08782c-SKI_SMAD_bind308-338 aa
PF14697Fer4_21316-339 aa
PF13746Fer4_18317-336 aa
PF00037Fer4320-339 aa
PF12837Fer4_6320-338 aa
PF12797Fer4_2320-335 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G412280PF05042Caleosin9180.005217.4
TkA04G412280PF05042Caleosin1511750.005217.4
TkA04G412280PF08782c-SKI_SMAD_bind3083387.47.5
TkA04G412280PF14697Fer4_213163391.2e-0835.7
TkA04G412280PF13746Fer4_183173360.1912.7
TkA04G412280PF00037Fer43203392.1e-1350.2
TkA04G412280PF12837Fer4_63203381.7e-0731.6
TkA04G412280PF12797Fer4_23203354e-0627.2
TkA04G412280PF13237Fer4_103203735.5e-0626.9
TkA04G412280PF05187Fer4_ETF_QO3203481.210.0
TkA04G412280PF13183Fer4_83213371.4e-0835.8
TkA04G412280PF12800Fer4_43213350.000123.0
TkA04G412280PF13534Fer4_173213360.003218.7
TkA04G412280PF13370Fer4_133213350.4911.8
TkA04G412280PF13459Fer4_153213342.59.6
TkA04G412280PF12838Fer4_73223762.2e-1247.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q42599Arabidopsis thalianasp|Q42599|NDS8A_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial83.400%Swiss-ProtMedium
Q9FX83Arabidopsis thalianasp|Q9FX83|NDS8B_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial83.900%Swiss-ProtMedium

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