TkA04G380380 | RubberDandelionOmics

Gene overview

TkA04G380380

Reference: TK1151 Chr: Chr04 Coordinates: 95816044-95819604 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3138 bp · TkA04G380380|TK1151|cDNA

ATGGAGAAGGGGTGGACGAAGGTATCCCGTCGTTCGAAAGATTCAGTGTTTGATCGCCTGGGACGTGATGATCATGCAATTAGGAAGCGATCTCAATTCGATAAACTCCGTAAGATTTCTACAAATATTTACGTCACAAATTTCCCGTTCTCTGTCACTGTTTTAGACATGCATCGACTTTGTGCCCCATATGGAACTATTGTGGACGTGTACTTCTCCAAACGTCTATCGAAAGCGGGAAAACGGTATGGTTTTGTCAG...

CDS

Download CDS FASTA

3138 bp · TkA04G380380|TK1151|CDS

ATGGAGAAGGGGTGGACGAAGGTATCCCGTCGTTCGAAAGATTCAGTGTTTGATCGCCTGGGACGTGATGATCATGCAATTAGGAAGCGATCTCAATTCGATAAACTCCGTAAGATTTCTACAAATATTTACGTCACAAATTTCCCGTTCTCTGTCACTGTTTTAGACATGCATCGACTTTGTGCCCCATATGGAACTATTGTGGACGTGTACTTCTCCAAACGTCTATCGAAAGCGGGAAAACGGTATGGTTTTGTCAG...

Protein

Download Protein FASTA

1045 aa · TkA04G380380|TK1151|PROTEIN

MEKGWTKVSRRSKDSVFDRLGRDDHAIRKRSQFDKLRKISTNIYVTNFPFSVTVLDMHRLCAPYGTIVDVYFSKRLSKAGKRYGFVRFLNVDDEATLIEQLRTIWMGSYKLFASAVIHDQSNKEINQKHVTKEKVSVKRDGVDPAMRRHPTNAMAKKTYASVVAPKIKSVIAKPNVIHLVSGEYIFDNQDHPKVCLASVKQFSSLPVMLDMCTANGFSEVDIRYVGGMWVMMEFQSATACNKFRNNEVTRSWFTQVLDWS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G380380`
TK1151 ID	TkA04G380380
OH-1004 ID	LXL04_020558
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	33.100
Protein coverage (%)	TK1151 91.005 / OH-1004 85.485 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA04G380380`
Location	Chr04:95816044-95819604 (-)
Description	Similar to Transposon TX1 uncharacterized 149 kDa protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_020558` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0032197 retrotransposition Biological Process GO:0090304 nucleic acid metabolic process Biological Process GO:0003723 RNA binding Molecular Function GO:0003824 catalytic activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.619

Rank 1 · TkA04G380380 · TK1151

Nucleus0.360

Rank 2 · TkA04G380380 · TK1151

Cell membrane0.080

Rank 3 · TkA04G380380 · TK1151

Endoplasmic reticulum0.043

Rank 4 · TkA04G380380 · TK1151

Plastid0.030

Rank 5 · TkA04G380380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076RRM_143-109 aa

PF14529Exo_endo_phos_2261-269 aa

PF03372Exo_endo_phos489-674 aa

PF14529Exo_endo_phos_2574-696 aa

PF30493DISC1757-807 aa

PF00078RVT_1812-838 aa

PF00078RVT_1912-1025 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G380380	`PF00076`	RRM_1	43	109	1.3e-07	32.1
TkA04G380380	`PF14529`	Exo_endo_phos_2	261	269	2.8e-05	24.7
TkA04G380380	`PF03372`	Exo_endo_phos	489	674	5.4e-11	43.4
TkA04G380380	`PF14529`	Exo_endo_phos_2	574	696	2.8e-05	24.7
TkA04G380380	`PF30493`	DISC1	757	807	0.22	11.1
TkA04G380380	`PF00078`	RVT_1	812	838	1.6e-13	51.7
TkA04G380380	`PF00078`	RVT_1	912	1025	1.6e-13	51.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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