TkA04G201930 | RubberDandelionOmics

Gene overview

TkA04G201930

Reference: TK1151 Chr: Chr04 Coordinates: 51914881-51916516 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1328 bp · TkA04G201930|TK1151|cDNA

TTCACATGTCCGAAGTCCATTGTATGCCTTCTTTCAACCGATGCTGCCATTTTCGTTCCTCTCTGATGATACAAGATTCATGGTATGCGTTCTCCTCTCCGCCTCGGTTTCGCAATCACCAGAAAACAATCGACAGTTGTTGAACGAAGGAGCACCGGAATCCAATATGTCAGAGAATGAAACAGTAAATGCATATTTGCCCGATGAGATCGTAAAGGACATCATCTCTCGACTCCCTGTCAAATCCTTATTGCAATTCA...

CDS

Download CDS FASTA

1224 bp · TkA04G201930|TK1151|CDS

ATGCTGCCATTTTCGTTCCTCTCTGATGATACAAGATTCATGGTATGCGTTCTCCTCTCCGCCTCGGTTTCGCAATCACCAGAAAACAATCGACAGTTGTTGAACGAAGGAGCACCGGAATCCAATATGTCAGAGAATGAAACAGTAAATGCATATTTGCCCGATGAGATCGTAAAGGACATCATCTCTCGACTCCCTGTCAAATCCTTATTGCAATTCAGATGCGTATCAAAGCATTGGAGAGATCTAATCGCAGGTAC...

Protein

Download Protein FASTA

407 aa · TkA04G201930|TK1151|PROTEIN

MLPFSFLSDDTRFMVCVLLSASVSQSPENNRQLLNEGAPESNMSENETVNAYLPDEIVKDIISRLPVKSLLQFRCVSKHWRDLIAGTQFINSHLKNAISSSTQHRILLPTSPLISLSYNNINESIQLDSPFLNPRSSIKILGSCNGLVCLMDATRDMIIYNPSTRRHFKPFQSPQQALHCSNRVEFVYGFGCISNRNDMRVVRFPRFGRDSDYNKLKVRDNPPNSPRIGHVSSCYDFIDTVGTFLNGFLHWLAYCNGNID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G201930`
TK1151 ID	TkA04G201930
OH-1004 ID	LXL04_034827
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G201930

Location Chr04:51914881-51916516 (-)

Description Similar to CPR1: F-box protein CPR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12560`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03995.x
`At3g07870`	F-box protein At3g07870.	No verified direct reference in this release
`At4g10190`	Putative F-box protein At4g10190.	No verified direct reference in this release
`At1g47730`	Putative F-box protein At1g47730.	No verified direct reference in this release
`At2g02030`	Putative F-box protein At2g02030.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_034827 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009626 plant-type hypersensitive response Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042177 negative regulation of protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G06240

ath:AT3G16210

ath:AT3G23880

ath:AT4G12560

ath:AT4G22390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.599

Rank 1 · TkA04G201930 · TK1151

Nucleus0.414

Rank 2 · TkA04G201930 · TK1151

Cell membrane0.101

Rank 3 · TkA04G201930 · TK1151

Endoplasmic reticulum0.075

Rank 4 · TkA04G201930 · TK1151

Lysosome / Vacuole0.046

Rank 5 · TkA04G201930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like52-86 aa

PF00646F-box53-85 aa

PF08268FBA_3111-380 aa

PF07734FBA_1114-399 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G201930	`PF12937`	F-box-like	52	86	6.7e-08	32.9
TkA04G201930	`PF00646`	F-box	53	85	3.8e-11	43.1
TkA04G201930	`PF08268`	FBA_3	111	380	1.6e-10	41.2
TkA04G201930	`PF07734`	FBA_1	114	399	5.7e-20	72.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SU30`	Arabidopsis thaliana	sp\|Q9SU30\|CPR1_ARATH F-box protein CPR1	30.300%	Swiss-Prot	Medium
`Q9SFC7`	Arabidopsis thaliana	sp\|Q9SFC7\|FB135_ARATH F-box protein At3g07870	27.100%	Swiss-Prot	Low
`O82622`	Arabidopsis thaliana	sp\|O82622\|FB227_ARATH Putative F-box protein At4g10190	24.600%	Swiss-Prot	Low
`Q9SXA0`	Arabidopsis thaliana	sp\|Q9SXA0\|FB42_ARATH Putative F-box protein At1g47730	24.200%	Swiss-Prot	Low
`Q9ZPS1`	Arabidopsis thaliana	sp\|Q9ZPS1\|FB94_ARATH Putative F-box protein At2g02030	25.100%	Swiss-Prot	Low

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