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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G160260
Reference: TK1151 Chr: Chr04 Coordinates: 41395706-41401313 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3766 bp · TkA04G160260|TK1151|cDNA

TTGGACGCAAGTTAACATATTACATAGTTTCTCTCTCCTCTTCCAGTCCATCTATACATACATGATATTGTATCTATATGTCTTAAAGAAAATATTTACATAATGTTAATTAAAACAACTCGTCGACTTATTTTATCAGTGGCTTCGTGGAACAGAGAGAAAGAGAGATCCCCTAATTCACAACCTTGATAATTCTATCAAATTCATCAAATTTCCCTCCCAATTTCTTGTTTTTGTCGGGTACTCTGTTGTTTCGATTG...

CDS

Download CDS FASTA

3168 bp · TkA04G160260|TK1151|CDS

ATGATAATCAAGCGGAAGTTGAAATCGGCAATGCCGAGATTGAAGCGTTGTCGAGTTAGTGAGTCGGGAGGCGGAGACGACGAAGAATGGTCGGGGAAATTGAAATCTCGGAAGAAGCGAAAGACTAAAAACGGGTATTACCCTCTGCATCTGCTCGGAGAGGTTGCCGCTGGGATCATTACGTTGAGTGAATTGGGATTCCACTTCACCGCCGGCGTTATCCCTAGCTTTTTCTGCAGCGACACAGGCGCAGTGGTGAT...

Protein

Download Protein FASTA

1055 aa · TkA04G160260|TK1151|PROTEIN

MIIKRKLKSAMPRLKRCRVSESGGGDDEEWSGKLKSRKKRKTKNGYYPLHLLGEVAAGIITLSELGFHFTAGVIPSFFCSDTGAVVIVDSKPNAPKTELVDNSNATNNDTVPPAKPRPPLVRTSRGRVQVLPSRFNDSILDNWKKEKTKLDVNQCSHLDPEFAPIKEKPVLKIPKPRDQIQTKKHNADKVSYKYRKSLPKFEEFEDDEYKSFDMIKYSGLNSQHNKDDDTNIKAPDEFSPGDIVWAKSGKHYPAWPAIVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G160260
TK1151 IDTkA04G160260
OH-1004 IDLXL04_035172
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G160260
LocationChr04:41395706-41401313 (-)
DescriptionSimilar to ATX4: Histone-lysine N-methyltransferase ATX4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g53430 Histone methyltransferase. No verified direct reference in this release
At4g27910 Histone methyltransferase. No verified direct reference in this release
At3g61740 Histone methyltransferase. No verified direct reference in this release
At2g31650 May participate in target-gene transcriptional regulation and associated histone methylation.
Combinatorial functions of diverse histone methylations in Arabidopsis thaliana flowering time regulation.2014 · DOI: 10.1111/nph.12493
Arabidopsis homolog of trithorax1 (ATX1) is required for cell production, patterning, and morphogenesis in root development.2014 · DOI: 10.1093/jxb/eru355
At1g05830 Histone methyltransferase.
The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions.2008 · DOI: 10.1105/tpc.107.056614
Combinatorial functions of diverse histone methylations in Arabidopsis thaliana flowering time regulation.2014 · DOI: 10.1111/nph.12493

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035172 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0009294 DNA-mediated transformation Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0009910 negative regulation of flower development Biological Process
GO:0010093 specification of floral organ identity Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0018022 peptidyl-lysine methylation Biological Process
KEGG gene cross-reference
ath:AT1G05830
ath:AT2G31650
ath:AT3G61740
ath:AT4G27910
ath:AT5G53430
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.930
Rank 1 · TkA04G160260 · TK1151
Cytoplasm0.113
Rank 2 · TkA04G160260 · TK1151
Cell membrane0.030
Rank 3 · TkA04G160260 · TK1151
Plastid0.015
Rank 4 · TkA04G160260 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkA04G160260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13901RH_dom139-205 aa
PF00855PWWP241-335 aa
PF13832zf-HC5HC2H_2368-395 aa
PF13771zf-HC5HC2H368-395 aa
PF00130C1_1384-418 aa
PF13901RH_dom399-461 aa
PF00628PHD408-419 aa
PF13831PHD_2413-418 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G160260PF13901RH_dom1392056.67.3
TkA04G160260PF00855PWWP2413355e-1350.1
TkA04G160260PF13832zf-HC5HC2H_23683952.4e-2796.0
TkA04G160260PF13771zf-HC5HC2H3683952.5e-1350.8
TkA04G160260PF00130C1_13844180.2711.8
TkA04G160260PF13901RH_dom3994616.67.3
TkA04G160260PF00628PHD4084193.9e-0833.9
TkA04G160260PF13831PHD_24134182.8e-1143.4
TkA04G160260PF13832zf-HC5HC2H_24214642.4e-2796.0
TkA04G160260PF13771zf-HC5HC2H4234782.5e-1350.8
TkA04G160260PF00130C1_14244570.2711.8
TkA04G160260PF00628PHD4284783.9e-0833.9
TkA04G160260PF31197PHD_JHD14284570.005717.2
TkA04G160260PF13831PHD_24444642.8e-1143.4
TkA04G160260PF00130C1_14634820.2711.8
TkA04G160260PF13771zf-HC5HC2H6026562.5e-1350.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GZ42Arabidopsis thalianasp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX560.600%Swiss-ProtHigh
Q9SUE7Arabidopsis thalianasp|Q9SUE7|ATX4_ARATH Histone-lysine N-methyltransferase ATX459.800%Swiss-ProtHigh
Q9M364Arabidopsis thalianasp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX350.900%Swiss-ProtHigh
Q9C5X4Arabidopsis thalianasp|Q9C5X4|ATX1_ARATH Histone H3-lysine(4) N-trimethyltransferase ATX133.400%Swiss-ProtLow
P0CB22Arabidopsis thalianasp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX232.800%Swiss-ProtLow

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