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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G158100
Reference: TK1151 Chr: Chr04 Coordinates: 40893344-40902558 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

7383 bp · TkA04G158100|TK1151|cDNA

GTGGGCCCTACGCCCAACAATGGCACCTTGTTGTAAAGATGAGCTGGTACCCCTGCCATCCTCTATAAAATCAACTTACCACCCACCTCGTCGAGACCGAGAAAAACCCCACCCACCACAACTCTCTCTCTCTTTCTCTCTCTCTCGTGTGTCTGTGCATATCCGCAGCCGTGGGCTGCTAAGTCGGTTGTTCAGTTTTGTTCGTTTTATCTTAAGATTCCCCTTTAATCATATAACCAGCATATTCAATCCATATTCAA...

CDS

Download CDS FASTA

6660 bp · TkA04G158100|TK1151|CDS

ATGTCGGTGGCTTTGAATCATGTTGTTCAGGCTCGGCCCGACCCGGACGTAACAAAATCCTTCGGTTCCCGTCCGTTAAACGGCTTAGCTCGGGTTGGGGTTAGCCGGAGCCGGACATGGGCAAGCCGTGGCTCGGTTGTTAAACAGTCTAGTCTCTTAGGGAAAAGTTTCTACGGGACTAGGCTGCTTCGTGGGTCCGTTTCCGAGACGCTCCATCAATGGAAATCCGATGGTCCTGGCCGTGATCCGAAGCTTAAGGT...

Protein

Download Protein FASTA

2219 aa · TkA04G158100|TK1151|PROTEIN

MSVALNHVVQARPDPDVTKSFGSRPLNGLARVGVSRSRTWASRGSVVKQSSLLGKSFYGTRLLRGSVSETLHQWKSDGPGRDPKLKVVVRSSLSLVPEKPLGLYDPSFDKDACGVGFVAELSGKSNRNTVTDAIEMLVRMSHRGACGCETNTGDGAGILVGLPHDFYKEVAKDEGFELPEPGKYAVGMFFLPTSETRREQSKIVFTKVAESLGHTVLGWRTVPTDNSGLGKSAIQTEPVIEQVFLTPTSRSKADFEQQMY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G158100
TK1151 IDTkA04G158100
OH-1004 IDLXL04_035178
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G158100
LocationChr04:40893344-40902558 (-)
DescriptionSimilar to GLT1: Glutamate synthase 1 [NADH], chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g53460 Involved in glutamate biosynthesis.
Arabidopsis glt1-T mutant defines a role for NADH-GOGAT in the non-photorespiratory ammonium assimilatory pathway.2002 · DOI: 10.1046/j.1365-313x.2002.01218.x

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0681900 Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. No verified direct reference in this release
Os05g0555600 Involved in glutamate biosynthesis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035178 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006537 glutamate biosynthetic process Biological Process
GO:0019676 ammonia assimilation cycle Biological Process
GO:0048589 developmental growth Biological Process
GO:0060359 response to ammonium ion Biological Process
GO:0097054 L-glutamate biosynthetic process Biological Process
GO:0005759 mitochondrial matrix Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009501 amyloplast Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0005506 iron ion binding Molecular Function
KEGG gene cross-reference
ath:AT5G53460
dosa:Os01g0681900
dosa:Os05g0555600
osa:4324398
spo:2543509
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.370
Rank 1 · TkA04G158100 · TK1151
Mitochondrion0.243
Rank 2 · TkA04G158100 · TK1151
Plastid0.177
Rank 3 · TkA04G158100 · TK1151
Nucleus0.151
Rank 4 · TkA04G158100 · TK1151
Cell membrane0.071
Rank 5 · TkA04G158100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00310GATase_2113-540 aa
PF04898Glu_syn_central590-878 aa
PF00890FAD_binding_2715-739 aa
PF01266DAO855-967 aa
PF01645Glu_synthase945-1313 aa
PF00743FMO-like1166-1220 aa
PF04898Glu_syn_central1201-1316 aa
PF01493GXGXG1375-1623 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G158100PF00310GATase_21135406.2e-184612.3
TkA04G158100PF04898Glu_syn_central5908784.1e-111371.6
TkA04G158100PF00890FAD_binding_27157390.0001521.8
TkA04G158100PF01266DAO8559677.5e-0729.7
TkA04G158100PF01645Glu_synthase94513132.2e-147491.8
TkA04G158100PF00743FMO-like116612200.003916.4
TkA04G158100PF04898Glu_syn_central120113164.1e-111371.6
TkA04G158100PF01493GXGXG137516231.1e-108363.1
TkA04G158100PF00890FAD_binding_2153916960.0001521.8
TkA04G158100PF028262-Hacid_dh_C153915970.3311.0
TkA04G158100PF26508DUF8170161916970.3111.1
TkA04G158100PF00582Usp162516530.2312.7
TkA04G158100PF14691Fer4_20172918403.5e-2279.0
TkA04G158100PF028262-Hacid_dh_C184518850.3311.0
TkA04G158100PF13241NAD_binding_7185118850.001220.1
TkA04G158100PF00670AdoHcyase_NAD185118900.2512.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LV03Arabidopsis thalianasp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic83.600%Swiss-ProtHigh
Q0JKD0Oryza sativa subsp. japonicasp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic78.500%Swiss-ProtHigh
Q0DG35Oryza sativa subsp. japonicasp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic77.000%Swiss-ProtHigh

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