TkA04G152730 | RubberDandelionOmics

Gene overview

TkA04G152730

Reference: TK1151 Chr: Chr04 Coordinates: 39467155-39469658 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2033 bp · TkA04G152730|TK1151|cDNA

CTTGAAAGAAATGGGGAAGTCTTCGAATTGACAAAAAGAGAGGAAGGTCAAAACGATTGCCACCACAAAAGAGGAGCATTTGGTGCCACGTTTAAAACGGGAACAATAATCCGGATTAACTATTGGCGGTACAACAGTTGTGGACAGCGCACAAGCATTTGTTTTTAACAAAATCGCAGTCGGACGAAATCATGGTTTCTCTCCCCATATGCCATATCAATTCTTGACACACACGGTCTTCAGCAGAAGTTGCTCGAAAC...

CDS

Download CDS FASTA

1359 bp · TkA04G152730|TK1151|CDS

ATGTCGATCCTATGCGGCATCCCTCTTCTTGAATGCGTGTACTGCATCGGATGTGCTCGATGGGCATGGAAGCGATGCCTTCACACCGCCGGCCATGACAGCGAGACATGGGGAGTAGCCACAGCTGACGAATTCGAGCCTGTCCCAAGGCTTTGCAGGTACATACTCGCAGTCTATGAAGACGACCTAAGATGCCCTCTTTGGGAACCTCCAGGTGGGTACGGAATCAACCCCGATTGGTTGATTTTAAAAAGAACTTA...

Protein

Download Protein FASTA

452 aa · TkA04G152730|TK1151|PROTEIN

MSILCGIPLLECVYCIGCARWAWKRCLHTAGHDSETWGVATADEFEPVPRLCRYILAVYEDDLRCPLWEPPGGYGINPDWLILKRTYDDTRRRAPPYLLYLDHDHSDIVLAIRGLNLANQKDYVVLLDNKLGQRKFDGGYVHNGLLKAAGIVLDAEFETLKKLLDEYPSYSLTFTGHSLGSGVAALLAMVVVQNRHKLGDIDRKRVRCYSIAPARCMSLNLAVRYADIINSVVLQDDFLPRTATPLEDIFKSVFCLPCVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G152730`
TK1151 ID	TkA04G152730
OH-1004 ID	LXL04_024885
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	54.600
Protein coverage (%)	TK1151 98.451 / OH-1004 90.060 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G152730`
Location	Chr04:39467155-39469658 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024885` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0019369 arachidonate metabolic process Biological Process GO:0045471 response to ethanol Biological Process GO:0046340 diacylglycerol catabolic process Biological Process GO:0071926 endocannabinoid signaling pathway Biological Process GO:1901696 cannabinoid biosynthetic process Biological Process GO:0005886 plasma membrane Cellular Component GO:0031901 early endosome membrane Cellular Component GO:0004465 lipoprotein lipase activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:0047372 monoacylglycerol lipase activity Molecular Function
KEGG gene cross-reference	hsa:747 mmu:269060 rno:309207 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.305

Rank 1 · TkA04G152730 · TK1151

Cell membrane0.228

Rank 2 · TkA04G152730 · TK1151

Nucleus0.201

Rank 3 · TkA04G152730 · TK1151

Endoplasmic reticulum0.159

Rank 4 · TkA04G152730 · TK1151

Mitochondrion0.127

Rank 5 · TkA04G152730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03893Lipase3_N9-75 aa

PF01764Lipase_3109-244 aa

PF26363Phospholipase-like171-191 aa

PF01764Lipase_3338-358 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G152730	`PF03893`	Lipase3_N	9	75	1.6e-25	89.6
TkA04G152730	`PF01764`	Lipase_3	109	244	1.7e-29	103.2
TkA04G152730	`PF26363`	Phospholipase-like	171	191	0.093	12.7
TkA04G152730	`PF01764`	Lipase_3	338	358	1.7e-29	103.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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