Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1701 bp · TkA04G129930|TK1151|cDNA
ATGATACCTGTGAAAAATTCAAAATTTAAAACAGAAGCTGAAATTGAGAAGATGTATAAAACATATGCTGAAGAAGGTGGGTTCGATGTCCGCAAAACGACTACTAGGAAGTCAAAACAGGGAATTGTAAAATACATAGTTTGCAACAGGCAAGGAAAGCCAAATGCACGTCCGTATGACAGTTCAACGGATAAAAAGAGAAAAGAAAGGAGAAAATCATCAATGTTTAGAAGAGAGTGCACAGCGTGTATAAAATACAG...
1701 bp · TkA04G129930|TK1151|CDS
ATGATACCTGTGAAAAATTCAAAATTTAAAACAGAAGCTGAAATTGAGAAGATGTATAAAACATATGCTGAAGAAGGTGGGTTCGATGTCCGCAAAACGACTACTAGGAAGTCAAAACAGGGAATTGTAAAATACATAGTTTGCAACAGGCAAGGAAAGCCAAATGCACGTCCGTATGACAGTTCAACGGATAAAAAGAGAAAAGAAAGGAGAAAATCATCAATGTTTAGAAGAGAGTGCACAGCGTGTATAAAATACAG...
Protein
Download Protein FASTA566 aa · TkA04G129930|TK1151|PROTEIN
MIPVKNSKFKTEAEIEKMYKTYAEEGGFDVRKTTTRKSKQGIVKYIVCNRQGKPNARPYDSSTDKKRKERRKSSMFRRECTACIKYRICNDSTIELYVFNEEHNHALVNKANRNLLMQNRQINLYDMHFINNMATTNVGPVKAFRLMTSIRGGYELGGANENDYKNFNRDMNSHIKGSDAHLVITKHHLDGMFWADETAKMNYKEFGDVVSFDATFRTNKYRMVFVPFTGVDNHRRCVSFGAGLLCHEDEESYVWLLQRF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G129930 |
|---|---|
| TK1151 ID | TkA04G129930 |
| OH-1004 ID | LXL04_019373 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 84.000 |
| Protein coverage (%) | TK1151 99.823 / OH-1004 73.136Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G129930 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:33839177-33841786 (+) | |||||||||
| Description | Similar to FRS5: Protein FAR1-RELATED SEQUENCE 5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0007623 circadian rhythm Biological Process GO:0009585 red, far-red light phototransduction Biological Process GO:0009639 response to red or far red light Biological Process GO:0010017 red or far-red light signaling pathway Biological Process GO:0010018 far-red light signaling pathway Biological Process GO:0010218 response to far red light Biological Process GO:0042753 positive regulation of circadian rhythm Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:1900056 negative regulation of leaf senescence Biological Process GO:0005634 nucleus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G52520 ath:AT2G27110 ath:AT3G22170 ath:AT4G15090 ath:AT4G38180 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03101FAR118-108 aaPF21056ZSWIM1-3_RNaseH-like185-290 aaPF10551MULE209-302 aaPF00872Transposase_mut246-346 aaPF07564DUF1542413-445 aaPF04434SWIM436-461 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G129930 | PF03101 | FAR1 | 18 | 108 | 3.7e-13 | 50.7 |
| TkA04G129930 | PF21056 | ZSWIM1-3_RNaseH-like | 185 | 290 | 2.8e-07 | 31.2 |
| TkA04G129930 | PF10551 | MULE | 209 | 302 | 3.2e-29 | 101.9 |
| TkA04G129930 | PF00872 | Transposase_mut | 246 | 346 | 0.0035 | 17.0 |
| TkA04G129930 | PF07564 | DUF1542 | 413 | 445 | 0.25 | 12.1 |
| TkA04G129930 | PF04434 | SWIM | 436 | 461 | 4.2e-05 | 23.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.