TkA04G122710 | RubberDandelionOmics

Gene overview

TkA04G122710

Reference: TK1151 Chr: Chr04 Coordinates: 31880255-31882961 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1979 bp · TkA04G122710|TK1151|cDNA

ACAAAATTCACGAGGTTGGAGTGTCCAAGATAACTTGATACCTTGGGCGCCTAAAAATAGCAAAAATGGAGAAAAAGGAAGAGGTGCAGGAGGTGAAAGCAGACGACTCCACGCCACTCAGCGCCACCCTATTCGCATCAAACGTGATTAAAGCTTTTCTTATGTAATCCACCGTAAAAAGTCTTCATCTCTTTCATTCATTGCTCTATTTTTGGCTTTTTACTTCATCACAAGCGGTCCAACCGAGGTGGGTTTTTCTT...

CDS

Download CDS FASTA

1032 bp · TkA04G122710|TK1151|CDS

ATGGATCAGAATTTCGTAATTAGGTTTCTTGTTGTTCTTCTTCTTGTTCTTCAATTGGGGCTTTGGGTATCAGGCAATGTCGTATTCCAAGTTCAAAATAAATTCATAGGAGACAAAAGGTCTTTAACTGATTATAAAACTCATGATTCCAACCGTCATCGGAGAGTCCTCTCCGCCGTCGACCTCCCTTTGGGCGGCAACGGCAGCCCCACCGACGCAGCACTCTATTTCACCGAAATTGAAATCGGTACTCCTCCGAA...

Protein

Download Protein FASTA

343 aa · TkA04G122710|TK1151|PROTEIN

MDQNFVIRFLVVLLLVLQLGLWVSGNVVFQVQNKFIGDKRSLTDYKTHDSNRHRRVLSAVDLPLGGNGSPTDAALYFTEIEIGTPPKKFHVQVDTGSDLLWVNCAGCQNCPNKSDLGLPLAFYDPESSSSSDTITCDQEFCTTSLDPANSACVMGMQCSYNVRYGDGSSTRGYFVRDNVKLYKVSGDLQTASINGSITFGCGARQFGGLGTSQQAVDGILGFGQSNSSIISQLSLANKFKKTFSHCLAGSKGGGIFAIGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G122710`
TK1151 ID	TkA04G122710
OH-1004 ID	LXL04_035574
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 96.210 / OH-1004 68.465 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G122710

Location Chr04:31880255-31882961 (+)

Description Similar to At1g65240: Aspartic proteinase-like protein 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36260`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At1g65240`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At5g33340`	Involved in salicylic acid-dependent inducible resistance responses.	An extracellular aspartic protease functions in Arabidopsis disease resistance signaling.2004 · DOI: 10.1038/sj.emboj.7600086
`At1g01300`	Aspartyl protease.	No verified direct reference in this release
`At3g20015`	Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035574 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009555 pollen development Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

KEGG gene cross-reference

ath:AT1G65240

ath:AT2G17760

ath:AT2G35615

ath:AT5G36260

dosa:Os11g0184800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.361

Rank 1 · TkA04G122710 · TK1151

Cell membrane0.211

Rank 2 · TkA04G122710 · TK1151

Lysosome / Vacuole0.197

Rank 3 · TkA04G122710 · TK1151

Cytoplasm0.143

Rank 4 · TkA04G122710 · TK1151

Endoplasmic reticulum0.128

Rank 5 · TkA04G122710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N76-259 aa

PF00026Asp76-330 aa

PF14541TAXi_C277-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G122710	`PF14543`	TAXi_N	76	259	5.6e-43	147.9
TkA04G122710	`PF00026`	Asp	76	330	5.4e-22	79.3
TkA04G122710	`PF14541`	TAXi_C	277	332	0.00022	21.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q4V3D2`	Arabidopsis thaliana	sp\|Q4V3D2\|ASP36_ARATH Aspartic proteinase 36	50.200%	Swiss-Prot	High
`Q9S9K4`	Arabidopsis thaliana	sp\|Q9S9K4\|ASP39_ARATH Aspartic proteinase 39	46.500%	Swiss-Prot	Medium
`Q6XBF8`	Arabidopsis thaliana	sp\|Q6XBF8\|CDR1_ARATH Aspartic proteinase CDR1	32.700%	Swiss-Prot	Medium
`Q9LNJ3`	Arabidopsis thaliana	sp\|Q9LNJ3\|APF2_ARATH Aspartyl protease family protein 2	30.500%	Swiss-Prot	Medium
`Q9LHE3`	Arabidopsis thaliana	sp\|Q9LHE3\|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2	27.200%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card